GnpIS is a data repository for plant phenomics that stores whole field and greenhouse experimental data including environment measures. It allows long-term access to datasets following the FAIR principles: Findable, Accessible, Interoperable, and Reusable, by using a flexible and original approac...
Pommier, C.
,
Michotey, C.
,
Cornut, G.
,
Roumet, P.
,
Duchêne, E.
,
Flores, R.
,
Lebreton, A.
,
Alaux, M.
,
Durand, S.
,
Kimmel, E.
,
Letellier, T.
,
Merceron, G.
,
Laine, M.
,
Guerche, C.
,
Loaec, M.
,
Steinbach, D.
,
Laporte, M-A.
,
Arnaud, Elizabeth
,
Quesneville, H.
,
Adam-Blondon, Anne-Françoise
,
[Applying FAIR Principles to plant phenotypic data management in GnpIS]
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Applying FAIR Principles to plant phenotypic data management in GnpIS
Phenotype data are collected in trials conducted by experimental facilities including multilocal field networks and high throughput phenotyping facilities in controlled environments or fields. A given germplasm panel can therefore have been phenotyped in very different conditions and using very d...
Pommier, C.
,
Alaux, M.
,
Letellier, T.
,
Michotey, C.
,
Cornut, G.
,
Lebreton, A.
,
Labernadiere, M.
,
Laine, M.
,
Arnaud, Elizabeth
,
Adam-Blondon, Anne-Françoise
,
Quesneville, H.
,
[GnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use cases]
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GnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use cases
In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop wheat data interoperability guidelines. Interoperability is the ability of two or more systems and devices to cooperate and exchange data, and interpret that shared informa...
Dzale-Yeumo, E.
,
Alaux, M.
,
Arnaud, Elizabeth
,
Aubin, S.
,
Baumann, U.
,
Buche, P.
,
Cooper, L.
,
Cwiek-Kupczynska, H.
,
Davey, R.P.
,
Fulss, R.A.
,
Jonquet, C.
,
Laporte, M-A.
,
Larmande, Pierre
,
Pommier, C.
,
Protonotarios, V.
,
Reverte, C.
,
Shrestha, R.
,
Subirats, I.
,
Venkatesan, A.
,
Whan, A.
,
Quesneville, H.
,
[Developing data interoperability using standards: A wheat community use case]
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Developing data interoperability using standards: A wheat community use case