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Journal Article 2016-08-31

Autor: Perea, Claudia Hoz, Juan Fernando de la Cruz, Daniel Felipe Lobaton, Juan David Izquierdo, Paulo Quintero, Juan Camilo Raatz, Bodo Duitama, Jorge

Background Therecent development and availability of different genotype by sequencing (GBS) protocols provided a cost-effective approach to perform high-resolution genomic analysis of entire populations in different species. The central component of all these protocols is the digestion of the ini...

Enlace original: https://cgspace.cgiar.org/handle/10568/76973

Investigación en Agricultura
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Perea, Claudia ,  Hoz, Juan Fernando de la ,  Cruz, Daniel Felipe ,  Lobaton, Juan David ,  Izquierdo, Paulo ,  Quintero, Juan Camilo ,  Raatz, Bodo ,  Duitama, Jorge ,  [Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP] ,  Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
Journal Article 2014-01-11

Autor: Duitama, Jorge Quintero, Juan Camilo Cruz, Daniel Felipe Quintero, Constanza Hubmann, Georg Foulquié Moreno, Maria R. Verstrepen, Kevin J. Trevelein, Johan M Tohme, Joseph M.

Recent advances in high-throughput sequencing (HTS) technologies and computing capacity have produced unprecedented amounts of genomic data that have unraveled the genetics of phenotypic variability in several species. However, operating and integrating current software tools for data analysis st...

Enlace original: https://cgspace.cgiar.org/handle/10568/41897

Investigación en Agricultura
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Duitama, Jorge ,  Quintero, Juan Camilo ,  Cruz, Daniel Felipe ,  Quintero, Constanza ,  Hubmann, Georg ,  Foulquié Moreno, Maria R. ,  Verstrepen, Kevin J. ,  Trevelein, Johan M ,  Tohme, Joseph M. ,  [An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments] ,  An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments
Software 2014

Autor: Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge

NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bo...

Enlace original: https://cgspace.cgiar.org/handle/10568/68332

Investigación en Agricultura
Enlace permanente

Cruz, Daniel Felipe ,  Hoz, Juan Fernando de la ,  Perea, Claudia Samantha ,  Quintero, Juan Camilo ,  Duitama, Jorge ,  [NGSEP (Next Generation Sequencing Eclipse Plugin)] ,  NGSEP (Next Generation Sequencing Eclipse Plugin)

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