To explore the transcriptomic global response to osmotic stress in roots, 18 mRNA-seq libraries were generated from three triploid banana genotypes grown under mild osmotic stress (5% PEG) and control conditions. Illumina sequencing produced 568 million high quality reads, of which 70–84% were ma...
Zorrilla-Fontanesi, Y.
,
Rouard, M.
,
Cenci, A.
,
Kissel, E.
,
Do, H.
,
Dubois, E.
,
Nidelet, S.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.C.
,
[Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress]
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Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress
Zorrilla-Fontanesi, Y.
,
Kissel, E.
,
Rouard, M.
,
Cenci, A.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.
,
[Identification of drought responsive genes and promoters in Musa by using RNA-seq]
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Identification of drought responsive genes and promoters in Musa by using RNA-seq
Hueber, Y.
,
Hribova, E.
,
Houwe, I. van den
,
Roux, N.
,
Rouard, M.
,
Sardos, J.
,
[Application of NGS-generated SNP data to complex crops studies: the example of Musa spp. (banana).]
,
Application of NGS-generated SNP data to complex crops studies: the example of Musa spp. (banana).
Banana (Musa sp.) is a vegetatively propagated, low fertility, potentially hybrid and polyploid crop. These qualities make the breeding and targeted genetic improvement of this crop a difficult and long process. The Genome-Wide Association Study (GWAS) approach is becoming widely used in crop pla...
Sardos, J.
,
Rouard, M.
,
Hueber, Y.
,
Cenci, A.
,
Hyma, K.E.
,
Houwe, I. van den
,
Hribova, E.
,
Courtois, Brigitte
,
[A genome-wide association study on the seedless phenotype in banana (Musa spp.) reveals the potential of a selected panel to detect candidate genes in a vegetatively propagated crop]
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A genome-wide association study on the seedless phenotype in banana (Musa spp.) reveals the potential of a selected panel to detect candidate genes in a vegetatively propagated crop
Zorrilla-Fontanesi, Y.
,
Wesemael, J. van
,
Kissel, E.
,
Mduma, H.
,
Uwimana, B.
,
Rouard, M.
,
Cenci, A.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.
,
[Combined phenotypic and transcriptomic approaches to evaluate drought-stress response in banana (Musa spp.), a non-model crop]
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Combined phenotypic and transcriptomic approaches to evaluate drought-stress response in banana (Musa spp.), a non-model crop
Cenci, A.
,
Zorrilla-Fontanesi, J.
,
Kissel, E.
,
Hueber, Y.
,
Dubois, E.
,
Parrinello, H.
,
Swennen, R.L.
,
Roux, N.
,
Rouard, M.
,
Carpentier, S.
,
[Transcriptomic analysis in banana cultivars during an early stage of drought-stress]
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Transcriptomic analysis in banana cultivars during an early stage of drought-stress
Drought is a complex phenomenon that is relevant for many crops. Performing high-throughput transcriptomics in non-model crops is challenging. The non-model crop where our workflow has been tested on is banana (Musa spp.), which ranks among the top ten staple foods (total production over 145 mill...
Zorrilla-Fontanesi, Y.
,
Rouard, M.
,
Cenci, A.
,
Kissel, E.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.C.
,
[How do roots respond to osmotic stress? A transcriptomic approach to address this question in a non-model crop]
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How do roots respond to osmotic stress? A transcriptomic approach to address this question in a non-model crop
Guignon, V.
,
Ruas, M.
,
Droc, Gaëtan
,
Dereeper, A.
,
Sardos, J.
,
Hueber, Y.
,
Roux, N.
,
Rouard, M.
,
[Managing banana genetic resources and genomic information with the triplet Drupal/Tripal/Chado]
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Managing banana genetic resources and genomic information with the triplet Drupal/Tripal/Chado
Price, E.J.
,
Drapal, M.
,
Perez‐Fons, L.
,
Amah, D.
,
Bhattacharjee, R.
,
Heider, B.
,
Rouard, M.
,
Swennen, R.
,
Becerra Lopez‐Lavalle, L.A.
,
Fraser, Paul D.
,
[Metabolite database for root, tuber and banana crops to facilitate modern breeding in understudied crops]
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Metabolite database for root, tuber and banana crops to facilitate modern breeding in understudied crops