Bananas (Musa spp.) are an important crop worldwide. Most modern cultivars resulted from a complex polyploidization history that comprised three whole genome duplications (WGDs) shaping the haploid Musa genome, followed by inter- and intra-specific crosses between Musa acuminata and M. balbisiana...
Cenci, A.
,
Hueber, Y.
,
Zorrilla-Fontanesi, Y.
,
Wesemael, J. van
,
Kissel, E.
,
Gislard, M.
,
Sardos, J.
,
Swennen, R.
,
Roux, N.
,
Carpentier, S.C.
,
Rouard, M.
,
[Effect of paleopolyploidy and allopolyploidy on gene expression in banana]
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Effect of paleopolyploidy and allopolyploidy on gene expression in banana
To explore the transcriptomic global response to osmotic stress in roots, 18 mRNA-seq libraries were generated from three triploid banana genotypes grown under mild osmotic stress (5% PEG) and control conditions. Illumina sequencing produced 568 million high quality reads, of which 70–84% were ma...
Zorrilla-Fontanesi, Y.
,
Rouard, M.
,
Cenci, A.
,
Kissel, E.
,
Do, H.
,
Dubois, E.
,
Nidelet, S.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.C.
,
[Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress]
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Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress
Zorrilla-Fontanesi, Y.
,
Kissel, E.
,
Rouard, M.
,
Cenci, A.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.
,
[Identification of drought responsive genes and promoters in Musa by using RNA-seq]
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Identification of drought responsive genes and promoters in Musa by using RNA-seq
Zorrilla-Fontanesi, Y.
,
Wesemael, J. van
,
Kissel, E.
,
Mduma, H.
,
Uwimana, B.
,
Rouard, M.
,
Cenci, A.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.
,
[Combined phenotypic and transcriptomic approaches to evaluate drought-stress response in banana (Musa spp.), a non-model crop]
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Combined phenotypic and transcriptomic approaches to evaluate drought-stress response in banana (Musa spp.), a non-model crop
Drought is a complex phenomenon that is relevant for many crops. Performing high-throughput transcriptomics in non-model crops is challenging. The non-model crop where our workflow has been tested on is banana (Musa spp.), which ranks among the top ten staple foods (total production over 145 mill...
Zorrilla-Fontanesi, Y.
,
Rouard, M.
,
Cenci, A.
,
Kissel, E.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.C.
,
[How do roots respond to osmotic stress? A transcriptomic approach to address this question in a non-model crop]
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How do roots respond to osmotic stress? A transcriptomic approach to address this question in a non-model crop