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The Agronomy Field Information Management System (AgroFIMS) has been developed on CGIAR’s HIDAP (Highly Interactive Data Analysis Platform) created by CGIAR’s International Potato Center, CIP. AgroFIMS draws fully on ontologies, particularly the Agronomy Ontology (AgrO)1. It consists of modules t...


Aubert, C.Benites-Alfaro, O.E.Perez, I.Laporte, M.A.Juarez, H.Devare, M.[AgroFIMS v.1.0 - User manual]AgroFIMS v.1.0 - User manual

CGIAR Platform for Big Data in Agriculture[BIG DATA Ontologies Community of Practice – Work Plan 2020]BIG DATA Ontologies Community of Practice – Work Plan 2020

Many vocabularies and ontologies are produced to represent and annotate agronomic data. However, those ontologies are spread out, in different formats, of different size, with different structures and from overlapping domains. Therefore, there is need for a common platform to receive and host the...


Jonquet, C.Toulet, A.Arnaud, ElizabethAubin, S.Dzale-Yeumo, E.Emonet, V.Graybeal, J.Laporte, M-A.Musen, M.A.Pesce, V.Larmande, Pierre[AgroPortal: a vocabulary and ontology repository for agronomy]AgroPortal: a vocabulary and ontology repository for agronomy
Garnier, E.Stahl, U.Laporte, M-A.Kattge, J.Mougenot, I.Kuhn, I.Laporte, B.Amiaud, B.Ahrestani, F.S.Bonisch, G.Bunker, D.E.Cornelissen, J.H.C.Díaz, S.Enquist, B.J.Gachet, S.Jaureguiberry, P.Kleyer, M.Lavorel, S.Maicher, L.Pérez Harguindeguy, N.Poorter, H.Schildhauer, M.Shipley, B.Violle, C.Weiher, E.Wirth, C.Wright, I.J.Klotz, S.[Towards a thesaurus of plant characteristics: an ecological contribution]Towards a thesaurus of plant characteristics: an ecological contribution

Hualla, V.Gómez, R.Salas, A.Córdova, R.Haan, Stef deBonierbale, Merideth W.Simon, R.[Desarrollo de ontologias para papas, mejoradas.]Desarrollo de ontologias para papas, mejoradas.

A recurrent issue for data integration is the lack of a common and structured vocabulary used by different parties to describe their data sets. The Crop Ontology (www.cropontology.org) project aims to provide a central place where the crop community can gather to generate such standardized vocabu...


Matteis LChibon PEspinosa, H.Skofic MFinkers RBruskiewich, R.Hyman, GlennArnaud, Elizabeth[Crop ontology: vocabulary for crop-related concepts]Crop ontology: vocabulary for crop-related concepts

The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics ...


Cooper, L.Meier, A.Laporte, M-A.Elser, J.L.Mungall, C.Sinn, B.T.Cavaliere, D.Carbon, S.Dunn, N.A.Smith, B.Qu, B.Preece, J.Zhang, E.Todorovic, S.Gkouto, G.Doonan, J.H.Stevenson, D.W.Arnaud, ElizabethJaiswal, P.[The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics]The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

Bergh, I. van denRouard, M.Crichton, R.Sardos, J.Guignon, V.Ruas, M.Roux, N.[Crop ontology in support of conservation and use of banana genetic resources]Crop ontology in support of conservation and use of banana genetic resources

Shrestha, R.Mauleon, R.Simon, R.Jayashree, B.Channelière, S.Alercia, A.Senger, M.Manansala, K.Metz, T.Davenport, G.Bruskiewich, R.McLaren, G.Arnaud, Elizabeth[Development of GCP ontology for sharing crop information.]Development of GCP ontology for sharing crop information.

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