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Potato (Solanum tuberosum L.) is an important staple crop with a highly heterozygous and complex genome. Despite its cultural and economic significance, potato improvement efforts have been held back by the relative lack of genetic resources available to producers and breeders. The publication of...


Gálvez, J.H.Tai, H.H.Barkley, N.A.Gardner, K.Ellis, D.Stromvik, M.V.[Understanding potato with the help of genomics.]Understanding potato with the help of genomics.

The discipline of genomics is setting new paradigms in research approaches to resolving problems in human and animal health. We propose to determine the genome sequence of Theileria parva, a pathogen of cattle, using the random shotgun approach pioneered at The Institute for Genomic Research (TIG...


Nene, VishvanathBishop, Richard P.Morzaria, S.P.Gardner, M.J.Sugimoto, C.Ole-MoiYoi, O.K.Fraser, C.M.Irvin, A.[Theileria parva genomics reveals an atypical apicomplexan genome]Theileria parva genomics reveals an atypical apicomplexan genome

The genome locations of the wound-response genes that were expressedduring the post-harvest physiological deterioration (PPD) of cassava, suchas phenylalanine ammonia lyase, ?-1.3 glucanase, hydroxyprolinerich glycoprotein, catalase, 1-aminocyclopropane 1-carboxylate, cysteineprotease inhibitor, ...


Cortés Bermúdez, D.F.Reilly, KOkogbenin, EmmanuelBeeching, JRIglesias, C.A.Tohme, Joseph M.[Mapping wound-response genes involved in post-harvest physiological deterioration (PPD) of cassava (Manihot esculenta Crantz)]Mapping wound-response genes involved in post-harvest physiological deterioration (PPD) of cassava (Manihot esculenta Crantz)

The recombination and copy number shifting activities of the plant mitochondrial genome are widely documented across plant genera, but these genome processes have not been as well examined with regard to their roles in plant evolution. Because of the extensive plant collections of Phaseolus spp a...


Arrieta Montiel, MPLyznik, AWoloszynska, MJanska, HTohme, Joseph M.Mackenzie, S[Tracing evolutionary and developmental implications of mitochondrial stoichiometric shifting in the common bean]Tracing evolutionary and developmental implications of mitochondrial stoichiometric shifting in the common bean

Traditional breeding efforts are expected to be greatly enhanced through collaborative approaches incorporating functional, comparative and structural genomics. Potential benefits of combining genomic tools with traditional breeding have been a source of widespread interest and resulted in numero...


Ishitani, ManabuRao, Idupulapati M.Wenzl, PeterBeebe, Stephen E.Tohme, Joseph M.[Integration of genomics approach with traditional breeding towards improving abiotic stress adaptation: Drought and aluminum toxicity as case studies]Integration of genomics approach with traditional breeding towards improving abiotic stress adaptation: Drought and aluminum toxicity as case studies

Breeding goals of yield increases, root quality improvement, and disease resistance in cassava are considerably slowed down by biological characteristics of the crop, which includes a long growth cycle, a heterozygous genetic background and a poor knowledge of the organization of crop diversity. ...


Fregene, Martin A.Okogbenin, EmmanuelMba, CAngel, F.Suarez, MCGutiérrez A., Janeth PatriciaChavarriaga Aguirre, PaulRoca, William M.Bonierbale, Merideth W.Tohme, Joseph M.[Genome mapping in cassava improvement: Challenges, achievements and opportunities]Genome mapping in cassava improvement: Challenges, achievements and opportunities

Xanthomonas oryzae pathovar oryzae (Xoo) and X. oryzae pv. oryzicola (Xoc) cause bacterial diseases in rice: leaf blight and leaf streak, respectively. Although both the Asian and the African strains of Xoo induce similar symptoms, they are genetically different, with the African Xoo strains bein...


Soto Suárez, M.González, C.Piegu, BTohme, Joseph M.Verdier, Valérie[Genomic comparison between Xanthomonas oryzae pv.oryzae and Xanthomonas oryzae pv.oryzicola,usingsuppression-subtractive hybridization]Genomic comparison between Xanthomonas oryzae pv.oryzae and Xanthomonas oryzae pv.oryzicola,usingsuppression-subtractive hybridization

Cassava vein mosaic virus (CVMV) was found to be widespread throughout the north-eastern region of Brazil. The complete sequence of CVMV was determined, and the genome was 8158 bp in size. A cytosolic initiator methionine tRNA (tRNAmeti)-binding site that probably acts as a primer for minus-stran...


Calvert, Lee A.Ospina, MDShepherd, RJ[Characterization of cassava vein mosaic virus: A distinct plant pararetrovirus]Characterization of cassava vein mosaic virus: A distinct plant pararetrovirus

En 1998 se inició una investigación para determinar la etiología a de dos enfermedades de aparente naturaleza viral, que afectan el cultivo de la palma africana de aceite en el suroccidente colombiano. La pre sencia de la mancha anular se registré por primera vez en 1985, en el municipio de Tum...


Morales, Francisco JoséLozano Potes, IArroyave, José A.Castaño, M.Sedano Cruz, REVelasco, Ana Cecilia[Enfermedades virales de la palma de aceite en el suroccidente colombiano y sus agentes causales]Enfermedades virales de la palma de aceite en el suroccidente colombiano y sus agentes causales
Dereeper, AlexisHoma, FelixAndres, GwendolineSempere, GuilhemSarah, GautierHueber, YannDufayard, Jean-FrançoisRuiz, Manuel[SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations]SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations

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