GnpIS is a data repository for plant phenomics that stores whole field and greenhouse experimental data including environment measures. It allows long-term access to datasets following the FAIR principles: Findable, Accessible, Interoperable, and Reusable, by using a flexible and original approac...
Pommier, C.
,
Michotey, C.
,
Cornut, G.
,
Roumet, P.
,
Duchêne, E.
,
Flores, R.
,
Lebreton, A.
,
Alaux, M.
,
Durand, S.
,
Kimmel, E.
,
Letellier, T.
,
Merceron, G.
,
Laine, M.
,
Guerche, C.
,
Loaec, M.
,
Steinbach, D.
,
Laporte, M-A.
,
Arnaud, Elizabeth
,
Quesneville, H.
,
Adam-Blondon, Anne-Françoise
,
[Applying FAIR Principles to plant phenotypic data management in GnpIS]
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Applying FAIR Principles to plant phenotypic data management in GnpIS
Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional an...
Guignon, V.
,
Droc, Gaëtan
,
Alaux, M.
,
Baurens, F.C.
,
Garsmeur, O.
,
Poiron, C.
,
Carver, T.
,
Rouard, M.
,
Bocs, S.
,
[Chado Controller: advanced annotation management with a community annotation system]
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Chado Controller: advanced annotation management with a community annotation system
In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop wheat data interoperability guidelines. Interoperability is the ability of two or more systems and devices to cooperate and exchange data, and interpret that shared informa...
Dzale-Yeumo, E.
,
Alaux, M.
,
Arnaud, Elizabeth
,
Aubin, S.
,
Baumann, U.
,
Buche, P.
,
Cooper, L.
,
Cwiek-Kupczynska, H.
,
Davey, R.P.
,
Fulss, R.A.
,
Jonquet, C.
,
Laporte, M-A.
,
Larmande, Pierre
,
Pommier, C.
,
Protonotarios, V.
,
Reverte, C.
,
Shrestha, R.
,
Subirats, I.
,
Venkatesan, A.
,
Whan, A.
,
Quesneville, H.
,
[Developing data interoperability using standards: A wheat community use case]
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Developing data interoperability using standards: A wheat community use case