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A recurrent issue for data integration is the lack of a common and structured vocabulary used by different parties to describe their data sets. The Crop Ontology (www.cropontology.org) project aims to provide a central place where the crop community can gather to generate such standardized vocabu...


Matteis LChibon PEspinosa, H.Skofic MFinkers RBruskiewich, R.Hyman, GlennArnaud, Elizabeth[Crop ontology: vocabulary for crop-related concepts]Crop ontology: vocabulary for crop-related concepts

Remans, R.Villani, C.Jones, S.Smith, A.Laporte, M-A.Estrada Carmona, NataliaArnaud, ElizabethDulloo, EhsanChina, R.[Measuring agricultural biodiversity for sustainable food systems]Measuring agricultural biodiversity for sustainable food systems
Valette, L.Pietragalla, J.Laporte, M-A.Afolabi, A.Boukar, O.Cannon, Steven B.Diers, D.W.Dreher, K.A.Gaur, Pooran M.Guerrero, A.F.Hash, C.T.Hualla, V.Inoussa, D.Kalberer, S.R.Kondombo-Barro, C.P.Kumar, S.López Montes, A.Menda, N.Nelson, R.Ofodile, S.Patil, S.Prasad, P.Rajendran, K.Rami, J.F.Rathore, A.Sackville Hamilton, N.R.Reinhard Simon, Guvener SelimTeme, N.Weltzien, EvaArnaud, ElizabethShrestha, R.[Crop ontology: integration of standard variables]Crop ontology: integration of standard variables

Our project is to develop and support a reference ontology repository for the agronomic domain. By reusing the NCBO BioPortal technology, we have already designed and implemented a prototype ontology repository for plants and a few crops. We plan to turn that prototype into a real service to the ...


Jonquet, C.Dzale-Yeumo, E.Arnaud, ElizabethLarmande, PierreToulet, A.Laporte, M-A.[AgroPortal: a proposition for ontology-based services in the agronomic domain]AgroPortal: a proposition for ontology-based services in the agronomic domain

Phenotype data are collected in trials conducted by experimental facilities including multilocal field networks and high throughput phenotyping facilities in controlled environments or fields. A given germplasm panel can therefore have been phenotyped in very different conditions and using very d...


Pommier, C.Alaux, M.Letellier, T.Michotey, C.Cornut, G.Lebreton, A.Labernadiere, M.Laine, M.Arnaud, ElizabethAdam-Blondon, Anne-FrançoiseQuesneville, H.[GnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use cases]GnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use cases

Many vocabularies and ontologies are produced to represent and annotate agronomic data. By reusing the NCBO BioPortal technology, we have already designed and implemented an advanced prototype ontology repository for the agronomy domain. We plan to turn that prototype into a real service to the c...


Jonquet, C.Toulet, A.Arnaud, ElizabethAubin, S.Dzale-Yeumo, E.Emonet, V.Graybeal, J.Musen, M.A.Pommier, C.Larmande, Pierre[Reusing the NCBO BioPortal technology for agronomy to build AgroPortal]Reusing the NCBO BioPortal technology for agronomy to build AgroPortal
Arnaud, ElizabethEstrada Carmona, NataliaValette, L.Gebrehawaryat, Y.Fadda, Carlo[Agrobiodiversity data for supporting restoration of degraded ecosystem services]Agrobiodiversity data for supporting restoration of degraded ecosystem services

Around the world, a small number of plant species serve as the primary source of food for the human population, yet these crops are vulnerable to multiple stressors, such as diseases, nutrient deficiencies and unfavorable environmental conditions. Traditional breeding methods for plant improvemen...


Jaiswal, P.Cooper, L.Elser, J.L.Meier, A.Laporte, M-A.Mungall, C.Smith, B.Johnson, E.K.S.Seymour, M.Preece, J.Xu, X.Kitchen, R.S.Qu, B.Zhang, E.Arnaud, ElizabethCarbon, S.Todorovic, S.Stevenson, D.W.[Planteome: A resource for common reference ontologies and applications for plant biology]Planteome: A resource for common reference ontologies and applications for plant biology

The Crop Ontology is a service of the Integrated Breeding Platform (www.integratedbreeding.net) in collaboration with the CGIAR and partners and under the leadership of Bioversity international. The Crop Ontology (www.cropontology.org) provides harmonized and validated breeders’ trait names, mea...


Arnaud, ElizabethValette, L.Pietragalla, J.Laporte, M-A.Aubert, C.Devare, MedhaMcLaren, G.Ribaut, J-M.[The Crop Ontology: a source of standard traits and variables for breeding and agronomy]The Crop Ontology: a source of standard traits and variables for breeding and agronomy
Arnaud, ElizabethShrestha, R.Kulakow, P.A.Bakare, M.López Montes, A.Ofodile, S.Reddy T.P.Prasad, P.Shah, TushaarHash, C.T.Weltzien, EvaSissoko, I.Guerrero, A.F.Simon, R.Borja Borja, N.F.Ramil, M.Matteis, L.Skofic, M.Hazekamp, T.McLaren, G.Cooper, L.Jaiswal, P.Menda, N.Nelson, R.Grant, D.Bastow, R.Mueller, L.Rami, J.F.[The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.]The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.

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