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Many vocabularies and ontologies are produced to represent and annotate agronomic data. However, those ontologies are spread out, in different formats, of different size, with different structures and from overlapping domains. Therefore, there is need for a common platform to receive and host the...


Jonquet, C.Toulet, A.Arnaud, ElizabethAubin, S.Dzale-Yeumo, E.Emonet, V.Graybeal, J.Laporte, M-A.Musen, M.A.Pesce, V.Larmande, Pierre[AgroPortal: a vocabulary and ontology repository for agronomy]AgroPortal: a vocabulary and ontology repository for agronomy

The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics ...


Cooper, L.Meier, A.Laporte, M-A.Elser, J.L.Mungall, C.Sinn, B.T.Cavaliere, D.Carbon, S.Dunn, N.A.Smith, B.Qu, B.Preece, J.Zhang, E.Todorovic, S.Gkouto, G.Doonan, J.H.Stevenson, D.W.Arnaud, ElizabethJaiswal, P.[The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics]The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

CGIAR is a global research partnership of 15 geographically and scientifically diverse Centers dedicated to reducing poverty, enhancing food and nutrition security, and improving natural resource management. The Centers are charged with accelerating innovation to tackle challenges at a variety of...


Devare, MedhaZandstra, MeganClobridge, AbbyFotsy, MichelleAbreu, DavidArnaud, ElizabethBaraka, PaulBonaiuti, EnricoChukka, Srinivasa RaoDieng, IbnouDreher, KateErlita, SufietJuarez, H.Kim, SoonhoKoo, JawooMuchlish, UsmanMüller, MartinMwanzia, LeroyPoole, Elizabeth J.Siddiqui, Salman[Open Access and Open Data at CGIAR: challenges and solutions]Open Access and Open Data at CGIAR: challenges and solutions

Billot, C.Ramu, P.Bouchet, S.Chantereau, J.Deu, M.Gardes, L.Noyer, J.Rami, J.F.Rivallan, R.Li, Y.Lu, P.Wang, T.Folkertsma, R.T.Arnaud, ElizabethUpadhyaya, Hari D.Glaszmann, J.C.Hash, C.T.[Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources]Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources

GnpIS is a data repository for plant phenomics that stores whole field and greenhouse experimental data including environment measures. It allows long-term access to datasets following the FAIR principles: Findable, Accessible, Interoperable, and Reusable, by using a flexible and original approac...


Pommier, C.Michotey, C.Cornut, G.Roumet, P.Duchêne, E.Flores, R.Lebreton, A.Alaux, M.Durand, S.Kimmel, E.Letellier, T.Merceron, G.Laine, M.Guerche, C.Loaec, M.Steinbach, D.Laporte, M-A.Arnaud, ElizabethQuesneville, H.Adam-Blondon, Anne-Françoise[Applying FAIR Principles to plant phenotypic data management in GnpIS]Applying FAIR Principles to plant phenotypic data management in GnpIS
Channelière, S.Houwe, I. van denArnaud, ElizabethHorry, J.P.Roux, N.Ruas, M.[Standardized procedure for Musa germplasm characterization]Standardized procedure for Musa germplasm characterization

Leonelli, S.Davey, R.P.Arnaud, ElizabethParry, G.Bastow, R.[Data management and best practice for plant science]Data management and best practice for plant science

Background: Opportunities to use data and information to address challenges in international agricultural research and development are expanding rapidly. The use of agricultural trial and evaluation data has enormous potential to improve crops and management practices. However, for a number of re...


Hyman, GlennEspinosa, HerlinCamargo, PaolaAbreu, DavidDevare, MedhaArnaud, ElizabethPorter, C.H.Mwanzia, LeroySonder, KaiTraoré, Pierre Sibiry[Improving agricultural knowledge management: The AgTrials experience [version 1; referees: 2 approved]]Improving agricultural knowledge management: The AgTrials experience [version 1; referees: 2 approved]

The production of triploid banana and plantain (Musa spp.) cultivars with improved characteristics (e.g. greater disease resistance or higher yield), while still preserving the main features of current popular cultivars (e.g. taste and cooking quality), remains a major challenge for Musa breeders...


Hippolyte, I.Jenny, C.Gardes, L.Bakry, F.Rivallan, R.Pomies, V.Cubry, P.Tomekpe, K.Risterucci, A.M.Roux, N.Rouard, M.Arnaud, ElizabethKolesnikova-Allen, M.Perrier, X.[Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers]Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers
Thormann, I.Gaisberger, H.Mattei, F.Snook, L.K.Arnaud, Elizabeth[Digitization and online availability of original collecting mission data to improve data quality and enhance the conservation and use of plant genetic resources]Digitization and online availability of original collecting mission data to improve data quality and enhance the conservation and use of plant genetic resources

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