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The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics ...


Cooper, L.Meier, A.Laporte, M-A.Elser, J.L.Mungall, C.Sinn, B.T.Cavaliere, D.Carbon, S.Dunn, N.A.Smith, B.Qu, B.Preece, J.Zhang, E.Todorovic, S.Gkouto, G.Doonan, J.H.Stevenson, D.W.Arnaud, ElizabethJaiswal, P.[The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics]The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

Around the world, a small number of plant species serve as the primary source of food for the human population, yet these crops are vulnerable to multiple stressors, such as diseases, nutrient deficiencies and unfavorable environmental conditions. Traditional breeding methods for plant improvemen...


Jaiswal, P.Cooper, L.Elser, J.L.Meier, A.Laporte, M-A.Mungall, C.Smith, B.Johnson, E.K.S.Seymour, M.Preece, J.Xu, X.Kitchen, R.S.Qu, B.Zhang, E.Arnaud, ElizabethCarbon, S.Todorovic, S.Stevenson, D.W.[Planteome: A resource for common reference ontologies and applications for plant biology]Planteome: A resource for common reference ontologies and applications for plant biology

In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop wheat data interoperability guidelines. Interoperability is the ability of two or more systems and devices to cooperate and exchange data, and interpret that shared informa...


Dzale-Yeumo, E.Alaux, M.Arnaud, ElizabethAubin, S.Baumann, U.Buche, P.Cooper, L.Cwiek-Kupczynska, H.Davey, R.P.Fulss, R.A.Jonquet, C.Laporte, M-A.Larmande, PierrePommier, C.Protonotarios, V.Reverte, C.Shrestha, R.Subirats, I.Venkatesan, A.Whan, A.Quesneville, H.[Developing data interoperability using standards: A wheat community use case]Developing data interoperability using standards: A wheat community use case

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