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Quantitative trait loci (QTL) that confer broad‐spectrum resistance (BSR), or resistance that is effective against multiple and diverse plant pathogens, have been elusive targets of crop breeding programmes. Multiparent advanced generation intercross (MAGIC) populations, with their diverse geneti...


Bossa Castro, Ana M.Tekete, CheickRaghavan, ChitraDelorean, Emily E.Dereeper, AlexisDagno, KarimKoita, OusmaneMosquera Cifuentes, Gloria MariaLeung, HeiVerdier, ValérieLeach, Jan E.[Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population]Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population

BACKGROUND: Exploring the structure of genomes and analyzing their evolution is essential to understanding the ecological adaptation of organisms. However, with the large amounts of data being produced by next-generation sequencing, computational challenges arise in terms of storage, search, shar...


Sempere, GuilhemPhilippe, FlorianDereeper, AlexisRuiz, ManuelSarah, GautierLarmande, Pierre[Gigwa—Genotype investigator for genomewide analyses]Gigwa—Genotype investigator for genomewide analyses

Quantitative trait loci (QTL) that confer broad-spectrum resistance (BSR) have been elusive targets of crop breeding programs. Bacterial leaf streak (BLS) and bacterial blight (BB), caused by Xanthomonas oryzae pv. oryzicola (Xoc) and Xanthomonas oryzae pv. oryzae (Xoo), respectively, are respons...


Bossa Castro, Ana M.Tekete, CheickRaghavan, ChitraDelorean, Emily E.Dereeper, AlexisVerdier, ValérieDagno, KarimKoita, OusmaneMosquera Cifuentes, Gloria MariaLeung, HeiLeach, Jan E.[Broad-spectrum resistance and susceptibility to bacterial blight and bacterial leaf streak of rice]Broad-spectrum resistance and susceptibility to bacterial blight and bacterial leaf streak of rice

Disease resistance is the foundation for managing many plant diseases, because resistant varieties have the strongest impact with minimal environmental effects or cost. Consequently, sources of broad-spectrum resistance (BSR), or resistance that is effective against multiple and/or diverse pathog...


Leach, Jan E.Bossa Castro, Ana M.Huerta, Alejandra I.Delorean, Emily E.Raghavan, ChitraTekete, CheickDereeper, AlexisTonnessen, Bradley W.Koita, OusmaneMosquera Cifuentes, Gloria MariaLeung, HeiVerdier, Valérie[Quantitative resistance to bacterial pathogens of rice]Quantitative resistance to bacterial pathogens of rice
Dereeper, AlexisHoma, FelixAndres, GwendolineSempere, GuilhemSarah, GautierHueber, YannDufayard, Jean-FrançoisRuiz, Manuel[SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations]SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations

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