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Droc, GaëtanLariviere, D.Guignon, V.Yahiaoui, N.This, D.Garsmeur, O.Dereeper, A.Hamelin, C.Argout, X.Dufayard, Jean-FrançoisLengelle, J.Baurens, F.C.Cenci, A.Pitollat, B.D'Hont, A.Ruiz, M.Rouard, M.Bocs, S.[The Banana Genome Hub]The Banana Genome Hub

The whole genome sequence of Coffea canephora, the perennial diploid species known as Robusta, has been recently released. In the context of the C. canephora genome sequencing project and to support post-genomics efforts, we developed the Coffee Genome Hub (http://coffee-genome.org/), an integrat...


Dereeper, A.Bocs, S.Rouard, M.Guignon, V.Ravel, S.Tranchant-Dubreuil, C.Poncet, V.Garsmeur, O.Lashermes, P.Droc, Gaëtan[The coffee genome hub: a resource for coffee genomes]The coffee genome hub: a resource for coffee genomes

Edible bananas result from interspecific hybridization between Musa acuminata and Musa balbisiana, as well as among subspecies in M. acuminata. Four particular M. acuminata subspecies have been proposed as the main contributors of edible bananas, all of which radiated in a short period of time in...


Rouard, M.Droc, GaëtanMartin, G.Hueber, Y.Sardos, J.Guignon, V.Cenci, A.Geigle, B.Hibbins, M.Yahiaoui, N.Baurens, F.C.Berry, V.Hahn, M.D’Hont, A.Roux, N.[Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana)]Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana)

Rouard, M.Dereeper, A.Droc, GaëtanSarah, G.Dufayard, Jean-FrançoisGuignon, V.Hamelin, C.Homa, F.Lamotte, F. deLarmande, PierreLariviere, D.Sabot, F.Sempere, G.Summo, M.Pitollat, B.This, D.Bocs, S.Ruiz, M.[The South Green Bioinformatics platform]The South Green Bioinformatics platform

The study of gene families is an important field of comparative genomics, allowing, by the analysis of evolutionary history, to identify homology relationships, gene losses and to help in annotation transfers. The addition of metabolic information improves the identification of candidate genes by...


Larivière, D.Couvin, D.Droc, GaëtanLorenzo, G.Guignon, V.Rouard, M.Lyons, E.This, D.Bocs, S.Dufayard, Jean-François[Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting]Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting

Recent advances in genomics indicate functional significance of a majority of genome sequences and their long range interactions. As a detailed examination of genome organization and function requires very high quality genome sequence, the objective of this study was to improve reference genome a...


Martin, G.Baurens, F.C.Droc, GaëtanRouard, M.Cenci, A.Kilian, A.Hastie, A.Doležel, JaroslavAury, J.M.Alberti, A.Carreel, F.D'Hont, A.[Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods]Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods

Guignon, V.Droc, GaëtanRouard, M.Baurens, F.C.Ruiz, M.Roux, N.Sidibe-Bocs, S.[A community annotation system for Musa genomes]A community annotation system for Musa genomes

Rouard, M.Guignon, V.Walde, C.Droc, GaëtanZmasek, C.Dufayard, Jean-FrançoisConte, M.G.[GreenPhylDB: phylogenomic resources for comparative and functional genomics in plants]GreenPhylDB: phylogenomic resources for comparative and functional genomics in plants

Guignon, V.Ruas, M.Droc, GaëtanDereeper, A.Sardos, J.Hueber, Y.Roux, N.Rouard, M.[Managing banana genetic resources and genomic information with the triplet Drupal/Tripal/Chado]Managing banana genetic resources and genomic information with the triplet Drupal/Tripal/Chado

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