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Journal Article 2016-08-31

Autor: Perea, Claudia Hoz, Juan Fernando de la Cruz, Daniel Felipe Lobaton, Juan David Izquierdo, Paulo Quintero, Juan Camilo Raatz, Bodo Duitama, Jorge

Background Therecent development and availability of different genotype by sequencing (GBS) protocols provided a cost-effective approach to perform high-resolution genomic analysis of entire populations in different species. The central component of all these protocols is the digestion of the ini...

Enlace original: https://cgspace.cgiar.org/handle/10568/76973

Investigación en Agricultura
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Perea, Claudia ,  Hoz, Juan Fernando de la ,  Cruz, Daniel Felipe ,  Lobaton, Juan David ,  Izquierdo, Paulo ,  Quintero, Juan Camilo ,  Raatz, Bodo ,  Duitama, Jorge ,  [Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP] ,  Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
Journal Article 2015

Autor: Rebolledo, María Camila Dingkuhn, Michael Courtois, Brigitte Gibon, Y Clément-Vidal, A Cruz, Daniel Felipe Duitama, Jorge Lorieux, Mathias Luquet, D
Enlace original: https://cgspace.cgiar.org/handle/10568/66629

Investigación en Agricultura
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Rebolledo, María Camila ,  Dingkuhn, Michael ,  Courtois, Brigitte ,  Gibon, Y ,  Clément-Vidal, A ,  Cruz, Daniel Felipe ,  Duitama, Jorge ,  Lorieux, Mathias ,  Luquet, D ,  [Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping] ,  Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping
Journal Article 2014-01-11

Autor: Duitama, Jorge Quintero, Juan Camilo Cruz, Daniel Felipe Quintero, Constanza Hubmann, Georg Foulquié Moreno, Maria R. Verstrepen, Kevin J. Trevelein, Johan M Tohme, Joseph M.

Recent advances in high-throughput sequencing (HTS) technologies and computing capacity have produced unprecedented amounts of genomic data that have unraveled the genetics of phenotypic variability in several species. However, operating and integrating current software tools for data analysis st...

Enlace original: https://cgspace.cgiar.org/handle/10568/41897

Investigación en Agricultura
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Duitama, Jorge ,  Quintero, Juan Camilo ,  Cruz, Daniel Felipe ,  Quintero, Constanza ,  Hubmann, Georg ,  Foulquié Moreno, Maria R. ,  Verstrepen, Kevin J. ,  Trevelein, Johan M ,  Tohme, Joseph M. ,  [An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments] ,  An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments
Journal Article 2013

Autor: Ballén-Taborda, Carolina Plata, Germán Ayling, Sarah Rodríguez-Zapata, Fausto Becerra López Lavelle, Luis Augusto Duitama, Jorge Tohme, Joseph M.
Enlace original: https://cgspace.cgiar.org/handle/10568/51415

Investigación en Agricultura
RNA
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Ballén-Taborda, Carolina ,  Plata, Germán ,  Ayling, Sarah ,  Rodríguez-Zapata, Fausto ,  Becerra López Lavelle, Luis Augusto ,  Duitama, Jorge ,  Tohme, Joseph M. ,  [Identification of Cassava MicroRNAs under abiotic stress] ,  Identification of Cassava MicroRNAs under abiotic stress
Journal Article 2013

Autor: Fory Sánchez, Paola Andrea Triplett, Lindsay Ballen, Carolina Bello, Javier Duitama, Jorge Aricapa, María Girlena Prado, Gustavo A. Correa, Fernando Hamilton, John Leach, Jan Tohme, Joseph M. Mosquera Cifuentes, Gloria Maria
Enlace original: https://cgspace.cgiar.org/handle/10568/51446

Investigación en Agricultura
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Fory Sánchez, Paola Andrea ,  Triplett, Lindsay ,  Ballen, Carolina ,  Bello, Javier ,  Duitama, Jorge ,  Aricapa, María Girlena ,  Prado, Gustavo A. ,  Correa, Fernando ,  Hamilton, John ,  Leach, Jan ,  Tohme, Joseph M. ,  Mosquera Cifuentes, Gloria Maria ,  [Comparative analysis of two emerging rice seed bacterial pathogens] ,  Comparative analysis of two emerging rice seed bacterial pathogens
Journal Article 2013

Autor: Pais, TM Foulquié Moreno, Maria R. Hubmann, Georg Duitama, Jorge Swinnen, S Goovaerts, A Yang, Y. Dumortier, F Thevelein, JM
Enlace original: https://cgspace.cgiar.org/handle/10568/51493

Investigación en Agricultura
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Pais, TM ,  Foulquié Moreno, Maria R. ,  Hubmann, Georg ,  Duitama, Jorge ,  Swinnen, S ,  Goovaerts, A ,  Yang, Y. ,  Dumortier, F ,  Thevelein, JM ,  [Comparative polygenic analysis of maximal ethanol accumulation capacity and tolerance to high ethanol levels of cell proliferation in yeast] ,  Comparative polygenic analysis of maximal ethanol accumulation capacity and tolerance to high ethanol levels of cell proliferation in yeast
Dataset 2018-03-02

Autor: Lobaton, Juan David Miller, Tamara Gil, Juanita Ariza, Daniel Hoz, Juan Fernando de la Soler Garzón, Alvaro Beebe, Stephen E. Duitama, Jorge Gepts, Paul Raatz, Bodo

Common bean is the most important grain legume for human consumption and a main nutrition source in the tropics. Because bean production is reduced by both abiotic and biotic constraints, current breeding efforts are focused on the development of improved varieties with tolerance to these stresse...

Enlace original: https://cgspace.cgiar.org/handle/10568/93205

Investigación en Agricultura
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Lobaton, Juan David ,  Miller, Tamara ,  Gil, Juanita ,  Ariza, Daniel ,  Hoz, Juan Fernando de la ,  Soler Garzón, Alvaro ,  Beebe, Stephen E. ,  Duitama, Jorge ,  Gepts, Paul ,  Raatz, Bodo ,  [Data from: Resequencing of common bean identifies regions of inter-gene pool introgression and provides comprehensive resources for molecular breeding] ,  Data from: Resequencing of common bean identifies regions of inter-gene pool introgression and provides comprehensive resources for molecular breeding
Journal Article 2014-03-20

Autor: Duitama, Jorge Zablotskaya, Alena Gemayel, Rita Jansen, An Belet, Stefanie Vermeesch, Joris R Verstrepen, Kevin J. Froyen, Guy
Enlace original: https://cgspace.cgiar.org/handle/10568/41887

Investigación en Agricultura
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Duitama, Jorge ,  Zablotskaya, Alena ,  Gemayel, Rita ,  Jansen, An ,  Belet, Stefanie ,  Vermeesch, Joris R ,  Verstrepen, Kevin J. ,  Froyen, Guy ,  [Large-scale analysis of tandem repeat variability in the human genome] ,  Large-scale analysis of tandem repeat variability in the human genome
Journal Article 2016-04

Autor: Abt, Tom den Souffriau, Ben Foulquié Moreno, Maria R. Duitama, Jorge Thevelein, Johan

Isolation of mutants in populations of microorganisms has been a valuable tool in experimental genetics for decades. The main disadvantage, however, is the inability of isolating mutants in non-selectable polygenic traits. Most traits of organisms, however, are non-selectable and polygenic, inclu...

Enlace original: https://cgspace.cgiar.org/handle/10568/72960

Investigación en Agricultura
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Abt, Tom den ,  Souffriau, Ben ,  Foulquié Moreno, Maria R. ,  Duitama, Jorge ,  Thevelein, Johan ,  [Genomic saturation mutagenesis and polygenic analysis identify novel yeast genes affecting ethyl acetate production, a non-selectable polygenic trait] ,  Genomic saturation mutagenesis and polygenic analysis identify novel yeast genes affecting ethyl acetate production, a non-selectable polygenic trait
Software 2014

Autor: Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge

NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bo...

Enlace original: https://cgspace.cgiar.org/handle/10568/68332

Investigación en Agricultura
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Cruz, Daniel Felipe ,  Hoz, Juan Fernando de la ,  Perea, Claudia Samantha ,  Quintero, Juan Camilo ,  Duitama, Jorge ,  [NGSEP (Next Generation Sequencing Eclipse Plugin)] ,  NGSEP (Next Generation Sequencing Eclipse Plugin)

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