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Journal Article 2016

Autor: Pulido Tamayo, Sergio Duitama, Jorge Marchal, Kathleen

Identification of genomic regions associated with a phenotype of interest is a fundamental step toward solving questions in biology and improving industrial research. Bulk segregant analysis (BSA) combined with high-throughput sequencing is a technique to efficiently identify these genomic region...

Enlace original: https://cgspace.cgiar.org/handle/10568/73215

Investigación en Agricultura
Enlace permanente
Pulido Tamayo, Sergio ,  Duitama, Jorge ,  Marchal, Kathleen ,  [EXPLoRA-web: linkage analysis of quantitative trait loci using bulk segregant analysis] ,  EXPLoRA-web: linkage analysis of quantitative trait loci using bulk segregant analysis
Journal Article 2016-08-31

Autor: Perea, Claudia Hoz, Juan Fernando de la Cruz, Daniel Felipe Lobaton, Juan David Izquierdo, Paulo Quintero, Juan Camilo Raatz, Bodo Duitama, Jorge

Background Therecent development and availability of different genotype by sequencing (GBS) protocols provided a cost-effective approach to perform high-resolution genomic analysis of entire populations in different species. The central component of all these protocols is the digestion of the ini...

Enlace original: https://cgspace.cgiar.org/handle/10568/76973

Investigación en Agricultura
Enlace permanente
Perea, Claudia ,  Hoz, Juan Fernando de la ,  Cruz, Daniel Felipe ,  Lobaton, Juan David ,  Izquierdo, Paulo ,  Quintero, Juan Camilo ,  Raatz, Bodo ,  Duitama, Jorge ,  [Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP] ,  Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
Software 2014

Autor: Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge

NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bo...

Enlace original: https://cgspace.cgiar.org/handle/10568/68332

Investigación en Agricultura
Enlace permanente

Cruz, Daniel Felipe ,  Hoz, Juan Fernando de la ,  Perea, Claudia Samantha ,  Quintero, Juan Camilo ,  Duitama, Jorge ,  [NGSEP (Next Generation Sequencing Eclipse Plugin)] ,  NGSEP (Next Generation Sequencing Eclipse Plugin)

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