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Number of spikelets per panicle (NSP) is a key trait to increase yield potential in rice (O. sativa). The architecture of the rice inflorescence which is mainly determined by the length and number of primary (PBL and PBN) and secondary (SBL and SBN) branches can influence NSP. Although several ge...


Rebolledo, María CamilaPeña, Alexandra L.Duitama, JorgeCruz, Daniel FelipeGrenier, CécileTohme, Joseph M.[Combining image analysis,genome wide association studies and different field trials to reveal stable genetic regions related to panicle architecture and the number of spikelets per panicle in rice]Combining image analysis,genome wide association studies and different field trials to reveal stable genetic regions related to panicle architecture and the number of spikelets per panicle in rice
Duitama, JorgeSilva, AlexanderSanabria, YamidCruz, Daniel FelipeQuintero, ConstanzaBallen, CarolinaLorieux, MathiasScheffler, BrianFarmer, AndrewTorres Castro, Edgar AlonsoOard, JamesTohme, Joseph M.[Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection]Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection

Investigation of large structural variants (SVs) is a challenging yet important task in understanding trait differences in highly repetitive genomes. Combining different bioinformatic approaches for SV detection, we analyzed whole-genome sequencing data from 3000 rice genomes and identified 63 mi...


Fuentes, Roven RommelChebotarov, DmytroDuitama, JorgeSmith, SeanHoz, Juan Fernando de laMohiyuddin, MarghoobWing, Rod A.McNally, Kenneth L.Tatarinova, TatianaGrigoriev, AndreyMauleon, RamilAlexandrov, Nickolai[Structural variants in 3000 rice genomes]Structural variants in 3000 rice genomes
Rebolledo, María CamilaDingkuhn, MichaelCourtois, BrigitteGibon, YClément-Vidal, ACruz, Daniel FelipeDuitama, JorgeLorieux, MathiasLuquet, D[Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping]Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping

Recent advances in high-throughput sequencing (HTS) technologies and computing capacity have produced unprecedented amounts of genomic data that have unraveled the genetics of phenotypic variability in several species. However, operating and integrating current software tools for data analysis st...


Duitama, JorgeQuintero, Juan CamiloCruz, Daniel FelipeQuintero, ConstanzaHubmann, GeorgFoulquié Moreno, Maria R.Verstrepen, Kevin J.Trevelein, Johan MTohme, Joseph M.[An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments]An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments

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