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Cuéllar, Wilmer J.Cruzado, R.Fuentes, S.Untiveros, M.Soto, M.Kreuze, J.F.[Sequence characterization of a Peruvian isolate of sweet potato chlorotic stunt virus: Further variability and a model for p22 acquisition.]Sequence characterization of a Peruvian isolate of sweet potato chlorotic stunt virus: Further variability and a model for p22 acquisition.

Fuentes, S.Muller, G.Flores, B.[HQU – Sweetpotato NCM‐ELISA virus detection CIP – SOP021. Standard operational of procedures.]HQU – Sweetpotato NCM‐ELISA virus detection CIP – SOP021. Standard operational of procedures.
Untiveros, M.Fuentes, S.Kreuze, J.F.[Molecular variability of sweet potato feathery mottle virus and other potyviruses infecting sweet potato in Peru.]Molecular variability of sweet potato feathery mottle virus and other potyviruses infecting sweet potato in Peru.

We report the first identification of novel viruses, and sequence of an entire viral genome, by a single step of high-throughput parallel sequencing of small RNAs from diseased, as well as symptomless plants. Contigs were assembled from sequenced total siRNA from plants using small sequence assem...


Kreuze, J.F.Pérez, A.Untiveros, M.Quispe, D.Fuentes, S.Barker, I.Simon, R.[Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses.]Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses.

Accurate detection of viruses in plants and animals is critical for agriculture production and human health. Deep sequencing and assembly of virus-derived small interfering RNAs has proven to be a highly efficient approach for virus discovery. Here we present VirusDetect, a bioinformatics pipelin...


Yi ZhengShan GaoPadmanabhan, C.Li, R.Galvez, M.Gutiérrez, D.Fuentes, S.Kai-Shu LingKreuze, J.F.Zhangjun Fei[VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.]VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.

Sweet potato [Ipomoea batatas (L.) Lam] is increasingly becoming an important food and industrial crop worldwide that is affected by over thirty viruses belonging to different virus families. Little is known about these viruses on the many local and commercial sweet potato cultivars in the Caribb...


Alleyne, A.T.Cummins, C.Rowe, K.James, M.Fuentes, S.Gutiérrez, D.[Sequencing and assembly of small RNAs reveal the presence of several begomoviruses, potyviruses, badnaviruses and mastreviruses in the sweet potato leaf virome in Barbados.]Sequencing and assembly of small RNAs reveal the presence of several begomoviruses, potyviruses, badnaviruses and mastreviruses in the sweet potato leaf virome in Barbados.

Cuéllar, Wilmer J.Galvez, MarcoFuentes, S.Tugume, Joab K.Kreuze, J.F.[Synergistic interactions of begomoviruses with sweet potato chlorotic stunt virus (genus Crinivirus) in sweetpotato (Ipomoea batatas L.)]Synergistic interactions of begomoviruses with sweet potato chlorotic stunt virus (genus Crinivirus) in sweetpotato (Ipomoea batatas L.)

Fuentes, S.Muller, G.[HQU – Sweetpotato indicator plant diagnostic procedure CIP – SOP022. Standard operational of procedures.]HQU – Sweetpotato indicator plant diagnostic procedure CIP – SOP022. Standard operational of procedures.
Souza, J. deFuentes, S.Savenkov, E.I.Cuéllar, Wilmer J.Kreuze, J.F.[The complete nucleotide sequence of sweet potato C6 virus : a carlavirus lacking a cysteine-rich protein]The complete nucleotide sequence of sweet potato C6 virus : a carlavirus lacking a cysteine-rich protein

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