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Genetic diversity of the indigenous cattle of Kenya, Uganda, Ethiopia and Tanzania using high-density SNP data. The indigenous cattle make a significant contribution to the livelihood of many communities in Ethiopia, Tanzania and other countries in eastern Africa. Here, we identify the genetic st...
Cost-effective genotyping of livestock species can be done through a process which involves genotyping part of the population using a high density (HD) panel and the remainder with a lower density panel and then use imputation to infer the missing genotypes that are not included on the low densit...
Reproductive performance and disease data were recorded for 2 years on 1,824 dairy cows in smallholder farms using participatory approaches and onfarm recording. Most animals experienced one service to conception. Calving intervals were long, ranging between 261 and 761 days, with an average of 4...
The impact of utilizing the genomic relationship matrix (G) computed based on breedwise allele frequencies or different scaling factors on the accuracy of genomic prediction in cross-bred dairy cattle in smallholder systems was investigated. Data consisted of genotypes from the Illumina HD chip a...
The lack of data recording in smallholder dairy cattle system implies that the availability of molecular data could offer some quick wins in terms of using the genomic information in genomic evaluation and therefore genomic selection (GS). Initial studies have reported low to medium accuracy of g...
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