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Droc, GaëtanLariviere, D.Guignon, V.Yahiaoui, N.This, D.Garsmeur, O.Dereeper, A.Hamelin, C.Argout, X.Dufayard, Jean-FrançoisLengelle, J.Baurens, F.C.Cenci, A.Pitollat, B.D'Hont, A.Ruiz, M.Rouard, M.Bocs, S.[The Banana Genome Hub]The Banana Genome Hub

The whole genome sequence of Coffea canephora, the perennial diploid species known as Robusta, has been recently released. In the context of the C. canephora genome sequencing project and to support post-genomics efforts, we developed the Coffee Genome Hub (http://coffee-genome.org/), an integrat...


Dereeper, A.Bocs, S.Rouard, M.Guignon, V.Ravel, S.Tranchant-Dubreuil, C.Poncet, V.Garsmeur, O.Lashermes, P.Droc, Gaëtan[The coffee genome hub: a resource for coffee genomes]The coffee genome hub: a resource for coffee genomes

Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on m...


Selby, P.Abbeloos, R.Backlund, J.E.Guignon, V.Laporte, M-A.Rouard, M.[BrAPI - an application programming interface for plant breeding applications]BrAPI - an application programming interface for plant breeding applications

The study of gene families is an important field of comparative genomics, allowing, by the analysis of evolutionary history, to identify homology relationships, gene losses and to help in annotation transfers. The addition of metabolic information improves the identification of candidate genes by...


Larivière, D.Couvin, D.Droc, GaëtanLorenzo, G.Guignon, V.Rouard, M.Lyons, E.This, D.Bocs, S.Dufayard, Jean-François[Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting]Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting

Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional an...


Guignon, V.Droc, GaëtanAlaux, M.Baurens, F.C.Garsmeur, O.Poiron, C.Carver, T.Rouard, M.Bocs, S.[Chado Controller: advanced annotation management with a community annotation system]Chado Controller: advanced annotation management with a community annotation system

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