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Journal Article 2017-01

VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.

Autor: Yi Zheng Shan Gao Padmanabhan, C. Li, R. Galvez, M. Gutiérrez, D. Fuentes, S. Kai-Shu Ling Kreuze, J.F. Zhangjun Fei

Accurate detection of viruses in plants and animals is critical for agriculture production and human health. Deep sequencing and assembly of virus-derived small interfering RNAs has proven to be a highly efficient approach for virus discovery. Here we present VirusDetect, a bioinformatics pipelin...

Enlace original: https://cgspace.cgiar.org/handle/10568/80028

Investigación en Agricultura

VIRUS INDEXING

RNA

RNA SEQUENCE

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Yi Zheng , Shan Gao , Padmanabhan, C. , Li, R. , Galvez, M. , Gutiérrez, D. , Fuentes, S. , Kai-Shu Ling , Kreuze, J.F. , Zhangjun Fei , [VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.] , VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.

Journal Article 2019-05

Sequencing and assembly of small RNAs reveal the presence of several begomoviruses, potyviruses, badnaviruses and mastreviruses in the sweet potato leaf virome in Barbados.

Autor: Alleyne, A.T. Cummins, C. Rowe, K. James, M. Fuentes, S. Gutiérrez, D.

Sweet potato [Ipomoea batatas (L.) Lam] is increasingly becoming an important food and industrial crop worldwide that is affected by over thirty viruses belonging to different virus families. Little is known about these viruses on the many local and commercial sweet potato cultivars in the Caribb...

Enlace original: https://cgspace.cgiar.org/handle/10568/102096

Investigación en Agricultura

SWEET POTATOES

POTYVIRUSES

RNA

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Alleyne, A.T. , Cummins, C. , Rowe, K. , James, M. , Fuentes, S. , Gutiérrez, D. , [Sequencing and assembly of small RNAs reveal the presence of several begomoviruses, potyviruses, badnaviruses and mastreviruses in the sweet potato leaf virome in Barbados.] , Sequencing and assembly of small RNAs reveal the presence of several begomoviruses, potyviruses, badnaviruses and mastreviruses in the sweet potato leaf virome in Barbados.

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VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.

Sequencing and assembly of small RNAs reveal the presence of several begomoviruses, potyviruses, badnaviruses and mastreviruses in the sweet potato leaf virome in Barbados.