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Journal Article 2019

Autor: Worthington, Margaret Ebina, Masumi Yamanaka, Naoki Heffelfinger, Christopher Quintero, Constanza Zapata, Yeny Patricia Pérez, Juan Guillermo Selvaraj, Michael Ishitani, Manabu Duitama, Jorge Hoz, Juan Fernando de la Rao, Idupulapati M. Dellaporta, Stephen L. Tohme, Joseph M. Arango, Jacobo

The apomictic reproductive mode of Brachiaria (syn. Urochloa) forage species allows breeders to faithfully propagate heterozygous genotypes through seed over multiple generations. In Brachiaria, reproductive mode segregates as single dominant locus, the apospory-specific genomic region (ASGR). Th...

Enlace original: https://cgspace.cgiar.org/handle/10568/99319

Investigación en Agricultura
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Worthington, Margaret ,  Ebina, Masumi ,  Yamanaka, Naoki ,  Heffelfinger, Christopher ,  Quintero, Constanza ,  Zapata, Yeny Patricia ,  Pérez, Juan Guillermo ,  Selvaraj, Michael ,  Ishitani, Manabu ,  Duitama, Jorge ,  Hoz, Juan Fernando de la ,  Rao, Idupulapati M. ,  Dellaporta, Stephen L. ,  Tohme, Joseph M. ,  Arango, Jacobo ,  [Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola] ,  Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola
Journal Article 2018

Autor: Lobaton, Juan David Miller, Tamara Gil, Juanita Ariza, Daniel Hoz, Juan Fernando de la Soler Garzón, Alvaro Beebe, Stephen E. Duitama, Jorge Gepts, Paul Raatz, Bodo

Common bean (Phaseolus vulgaris L.) is the most important grain legume for human consumption and is a major nutrition source in the tropics. Because bean production is reduced by both abiotic and biotic constraints, current breeding efforts are focused on the development of improved varieties wit...

Enlace original: https://cgspace.cgiar.org/handle/10568/92030

Investigación en Agricultura
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Lobaton, Juan David ,  Miller, Tamara ,  Gil, Juanita ,  Ariza, Daniel ,  Hoz, Juan Fernando de la ,  Soler Garzón, Alvaro ,  Beebe, Stephen E. ,  Duitama, Jorge ,  Gepts, Paul ,  Raatz, Bodo ,  [Resequencing of common bean identifies regions of inter- gene pool introgression and provides comprehensive resources for molecular breeding] ,  Resequencing of common bean identifies regions of inter- gene pool introgression and provides comprehensive resources for molecular breeding
Journal Article 2019

Autor: Fuentes, Roven Rommel Chebotarov, Dmytro Duitama, Jorge Smith, Sean Hoz, Juan Fernando de la Mohiyuddin, Marghoob Wing, Rod A. McNally, Kenneth L. Tatarinova, Tatiana Grigoriev, Andrey Mauleon, Ramil Alexandrov, Nickolai

Investigation of large structural variants (SVs) is a challenging yet important task in understanding trait differences in highly repetitive genomes. Combining different bioinformatic approaches for SV detection, we analyzed whole-genome sequencing data from 3000 rice genomes and identified 63 mi...

Enlace original: https://cgspace.cgiar.org/handle/10568/100877

Investigación en Agricultura
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Fuentes, Roven Rommel ,  Chebotarov, Dmytro ,  Duitama, Jorge ,  Smith, Sean ,  Hoz, Juan Fernando de la ,  Mohiyuddin, Marghoob ,  Wing, Rod A. ,  McNally, Kenneth L. ,  Tatarinova, Tatiana ,  Grigoriev, Andrey ,  Mauleon, Ramil ,  Alexandrov, Nickolai ,  [Structural variants in 3000 rice genomes] ,  Structural variants in 3000 rice genomes
Journal Article 2016-08-31

Autor: Perea, Claudia Hoz, Juan Fernando de la Cruz, Daniel Felipe Lobaton, Juan David Izquierdo, Paulo Quintero, Juan Camilo Raatz, Bodo Duitama, Jorge

Background Therecent development and availability of different genotype by sequencing (GBS) protocols provided a cost-effective approach to perform high-resolution genomic analysis of entire populations in different species. The central component of all these protocols is the digestion of the ini...

Enlace original: https://cgspace.cgiar.org/handle/10568/76973

Investigación en Agricultura
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Perea, Claudia ,  Hoz, Juan Fernando de la ,  Cruz, Daniel Felipe ,  Lobaton, Juan David ,  Izquierdo, Paulo ,  Quintero, Juan Camilo ,  Raatz, Bodo ,  Duitama, Jorge ,  [Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP] ,  Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
Dataset 2018-03-02

Autor: Lobaton, Juan David Miller, Tamara Gil, Juanita Ariza, Daniel Hoz, Juan Fernando de la Soler Garzón, Alvaro Beebe, Stephen E. Duitama, Jorge Gepts, Paul Raatz, Bodo

Common bean is the most important grain legume for human consumption and a main nutrition source in the tropics. Because bean production is reduced by both abiotic and biotic constraints, current breeding efforts are focused on the development of improved varieties with tolerance to these stresse...

Enlace original: https://cgspace.cgiar.org/handle/10568/93205

Investigación en Agricultura
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Lobaton, Juan David ,  Miller, Tamara ,  Gil, Juanita ,  Ariza, Daniel ,  Hoz, Juan Fernando de la ,  Soler Garzón, Alvaro ,  Beebe, Stephen E. ,  Duitama, Jorge ,  Gepts, Paul ,  Raatz, Bodo ,  [Data from: Resequencing of common bean identifies regions of inter-gene pool introgression and provides comprehensive resources for molecular breeding] ,  Data from: Resequencing of common bean identifies regions of inter-gene pool introgression and provides comprehensive resources for molecular breeding
Software 2014

Autor: Cruz, Daniel Felipe Hoz, Juan Fernando de la Perea, Claudia Samantha Quintero, Juan Camilo Duitama, Jorge

NGSEP (Next Generation Sequencing Eclipse Plugin), an integrated framework for analysis of high throughput sequencing reads. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. NGSEP also provides a user interface for bo...

Enlace original: https://cgspace.cgiar.org/handle/10568/68332

Investigación en Agricultura
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Cruz, Daniel Felipe ,  Hoz, Juan Fernando de la ,  Perea, Claudia Samantha ,  Quintero, Juan Camilo ,  Duitama, Jorge ,  [NGSEP (Next Generation Sequencing Eclipse Plugin)] ,  NGSEP (Next Generation Sequencing Eclipse Plugin)

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