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The apomictic reproductive mode of Brachiaria (syn. Urochloa) forage species allows breeders to faithfully propagate heterozygous genotypes through seed over multiple generations. In Brachiaria, reproductive mode segregates as single dominant locus, the apospory-specific genomic region (ASGR). Th...


Worthington, MargaretEbina, MasumiYamanaka, NaokiHeffelfinger, ChristopherQuintero, ConstanzaZapata, Yeny PatriciaPérez, Juan GuillermoSelvaraj, MichaelIshitani, ManabuDuitama, JorgeHoz, Juan Fernando de laRao, Idupulapati M.Dellaporta, Stephen L.Tohme, Joseph M.Arango, Jacobo[Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola]Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola

Common bean (Phaseolus vulgaris L.) is the most important grain legume for human consumption and is a major nutrition source in the tropics. Because bean production is reduced by both abiotic and biotic constraints, current breeding efforts are focused on the development of improved varieties wit...


Lobaton, Juan DavidMiller, TamaraGil, JuanitaAriza, DanielHoz, Juan Fernando de laSoler Garzón, AlvaroBeebe, Stephen E.Duitama, JorgeGepts, PaulRaatz, Bodo[Resequencing of common bean identifies regions of inter- gene pool introgression and provides comprehensive resources for molecular breeding]Resequencing of common bean identifies regions of inter- gene pool introgression and provides comprehensive resources for molecular breeding

Investigation of large structural variants (SVs) is a challenging yet important task in understanding trait differences in highly repetitive genomes. Combining different bioinformatic approaches for SV detection, we analyzed whole-genome sequencing data from 3000 rice genomes and identified 63 mi...


Fuentes, Roven RommelChebotarov, DmytroDuitama, JorgeSmith, SeanHoz, Juan Fernando de laMohiyuddin, MarghoobWing, Rod A.McNally, Kenneth L.Tatarinova, TatianaGrigoriev, AndreyMauleon, RamilAlexandrov, Nickolai[Structural variants in 3000 rice genomes]Structural variants in 3000 rice genomes

Background Therecent development and availability of different genotype by sequencing (GBS) protocols provided a cost-effective approach to perform high-resolution genomic analysis of entire populations in different species. The central component of all these protocols is the digestion of the ini...


Perea, ClaudiaHoz, Juan Fernando de laCruz, Daniel FelipeLobaton, Juan DavidIzquierdo, PauloQuintero, Juan CamiloRaatz, BodoDuitama, Jorge[Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP]Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP

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