The fate of doubled genes, from allopolyploid or autopolyploid origin, is controlled at multiple levels, resulting in the modern day cultivars. We studied the root growth of 3 different triploid banana cultivars under control and osmotic stress conditions. The root growth of the allopolyploid ABB...
Wesemael, J. van
,
Hueber, Y.
,
Kissel, E.
,
Campos, N.
,
Swennen, R.L.
,
Carpentier, S.
,
[Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics]
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Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics
Water deficit is one of the world’s major constraints in agriculture and will aggravate in the future. Banana (Musa spp.) is an important crop that needs vast amounts of water for optimal production. The International Transit Center of Bioversity International holds the world’s biggest collection...
Wesemael, J. van
,
Kissel, E.
,
Eyland, D.
,
Lawson, T.
,
Swennen, R.
,
Carpentier, S.C.
,
[Using growth and transpiration phenotyping under controlled conditions to select water efficient banana genotypes]
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Using growth and transpiration phenotyping under controlled conditions to select water efficient banana genotypes
Bananas (Musa spp.) are an important crop worldwide. Most modern cultivars resulted from a complex polyploidization history that comprised three whole genome duplications (WGDs) shaping the haploid Musa genome, followed by inter- and intra-specific crosses between Musa acuminata and M. balbisiana...
Cenci, A.
,
Hueber, Y.
,
Zorrilla-Fontanesi, Y.
,
Wesemael, J. van
,
Kissel, E.
,
Gislard, M.
,
Sardos, J.
,
Swennen, R.
,
Roux, N.
,
Carpentier, S.C.
,
Rouard, M.
,
[Effect of paleopolyploidy and allopolyploidy on gene expression in banana]
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Effect of paleopolyploidy and allopolyploidy on gene expression in banana
To explore the transcriptomic global response to osmotic stress in roots, 18 mRNA-seq libraries were generated from three triploid banana genotypes grown under mild osmotic stress (5% PEG) and control conditions. Illumina sequencing produced 568 million high quality reads, of which 70–84% were ma...
Zorrilla-Fontanesi, Y.
,
Rouard, M.
,
Cenci, A.
,
Kissel, E.
,
Do, H.
,
Dubois, E.
,
Nidelet, S.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.C.
,
[Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress]
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Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress
Zorrilla-Fontanesi, Y.
,
Kissel, E.
,
Rouard, M.
,
Cenci, A.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.
,
[Identification of drought responsive genes and promoters in Musa by using RNA-seq]
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Identification of drought responsive genes and promoters in Musa by using RNA-seq
Zorrilla-Fontanesi, Y.
,
Wesemael, J. van
,
Kissel, E.
,
Mduma, H.
,
Uwimana, B.
,
Rouard, M.
,
Cenci, A.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.
,
[Combined phenotypic and transcriptomic approaches to evaluate drought-stress response in banana (Musa spp.), a non-model crop]
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Combined phenotypic and transcriptomic approaches to evaluate drought-stress response in banana (Musa spp.), a non-model crop
Cenci, A.
,
Zorrilla-Fontanesi, J.
,
Kissel, E.
,
Hueber, Y.
,
Dubois, E.
,
Parrinello, H.
,
Swennen, R.L.
,
Roux, N.
,
Rouard, M.
,
Carpentier, S.
,
[Transcriptomic analysis in banana cultivars during an early stage of drought-stress]
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Transcriptomic analysis in banana cultivars during an early stage of drought-stress
Drought is a complex phenomenon that is relevant for many crops. Performing high-throughput transcriptomics in non-model crops is challenging. The non-model crop where our workflow has been tested on is banana (Musa spp.), which ranks among the top ten staple foods (total production over 145 mill...
Zorrilla-Fontanesi, Y.
,
Rouard, M.
,
Cenci, A.
,
Kissel, E.
,
Roux, N.
,
Swennen, R.L.
,
Carpentier, S.C.
,
[How do roots respond to osmotic stress? A transcriptomic approach to address this question in a non-model crop]
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How do roots respond to osmotic stress? A transcriptomic approach to address this question in a non-model crop