The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics ...
Cooper, L.
,
Meier, A.
,
Laporte, M-A.
,
Elser, J.L.
,
Mungall, C.
,
Sinn, B.T.
,
Cavaliere, D.
,
Carbon, S.
,
Dunn, N.A.
,
Smith, B.
,
Qu, B.
,
Preece, J.
,
Zhang, E.
,
Todorovic, S.
,
Gkouto, G.
,
Doonan, J.H.
,
Stevenson, D.W.
,
Arnaud, Elizabeth
,
Jaiswal, P.
,
[The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics]
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The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on m...
Selby, P.
,
Abbeloos, R.
,
Backlund, J.E.
,
Guignon, V.
,
Laporte, M-A.
,
Rouard, M.
,
[BrAPI - an application programming interface for plant breeding applications]
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BrAPI - an application programming interface for plant breeding applications
GnpIS is a data repository for plant phenomics that stores whole field and greenhouse experimental data including environment measures. It allows long-term access to datasets following the FAIR principles: Findable, Accessible, Interoperable, and Reusable, by using a flexible and original approac...
Pommier, C.
,
Michotey, C.
,
Cornut, G.
,
Roumet, P.
,
Duchêne, E.
,
Flores, R.
,
Lebreton, A.
,
Alaux, M.
,
Durand, S.
,
Kimmel, E.
,
Letellier, T.
,
Merceron, G.
,
Laine, M.
,
Guerche, C.
,
Loaec, M.
,
Steinbach, D.
,
Laporte, M-A.
,
Arnaud, Elizabeth
,
Quesneville, H.
,
Adam-Blondon, Anne-Françoise
,
[Applying FAIR Principles to plant phenotypic data management in GnpIS]
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Applying FAIR Principles to plant phenotypic data management in GnpIS
Conte, M.G.
,
Laporte, M-A.
,
Perin, C.
,
Rouard, M.
,
[GreenPhylDB: A gene family database for plant functional genomics]
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GreenPhylDB: A gene family database for plant functional genomics