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Xu, X.Pan, P.Cheng, S.Zhang, B.Mu, D.Ni, P.Zhang, G.Yang, S.Li, R.Wang, S.Orjeda, G.Guzmán, F.Torres, M.Lozano, R.Ponce, O.Martínez, D.Cruz, G. de laChakrabarti, S.K.Patil, V.U.Skryabin, K.G.Kuznetsov, B.B.Ravin, N.V.Kolganova, T.V.Beletsky, A.V.Mardanov, A.V.Genova, A.D.Bolser, D.M.Martin, D.M.A.Li, G.Yang, Y.Kuang, H.Hu, Q.Xiong, X.Bishop, G.J.Sagredo, B.Mejia, N.Zagorski, W.Gromadka, R.Gawor, J.Szczesny, P.Huang, S.Zhang, Z.Liang, C.He, J.Li, Y.He, Y.Xu, J.Zhang YanyanXie, B.Du, Y.Qu, D.Bonierbale, Merideth W.Ghislain, M.Herrera, M.R.Giuliano, G.Pietrella, M.Perrotta, G.Facella, P.O'Brien, K.Feingold, S.E.Barreiro, L.E.Massa, G.A.Diambra, L.Whitty, B.R.Vaillancourt, B.Lin, H.Massa, A.N.Geoffroy, M.Lundback, S.DellaPenna, D.Buell, R.Sharma, S.K.Marshall, D.F.Waugh, R.Bryan, G.J.Destefanis, M.Nagy, I.Milbourne, D.Thomson, S.J.Fiers, M.Jacobs, J.M.E.Nielsen, K.L.Sonderkaer, M.Iovene, M.Torres, G.A.Jiang, J.Veilleux, R.E.Bachem, C.W.B.Boer, J. de.Borm, T.Kloosterman, B.Eck, H. van.Datema, E.Lintel Hekkert, B. te.Goverse, A.Ham, R.C.H.J. van.Visser, Richard G.F.[Genome sequence and analysis of the tuber crop potato.]Genome sequence and analysis of the tuber crop potato.

Accurate detection of viruses in plants and animals is critical for agriculture production and human health. Deep sequencing and assembly of virus-derived small interfering RNAs has proven to be a highly efficient approach for virus discovery. Here we present VirusDetect, a bioinformatics pipelin...


Yi ZhengShan GaoPadmanabhan, C.Li, R.Galvez, M.Gutiérrez, D.Fuentes, S.Kai-Shu LingKreuze, J.F.Zhangjun Fei[VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.]VirusDetect: an automated pipeline for efficient virus discovery using deep sequencing of small RNAs.
Abad, J.A.Li, R.Fuentes, S.Kreuze, J.F.Loschinkohl, C.Bandla, P.[Interception and identification by deep sequencing of a "caulimo-like" virus in a potato germplasm accession imported from South America.]Interception and identification by deep sequencing of a "caulimo-like" virus in a potato germplasm accession imported from South America.

Small interfering RNA (siRNA) duplexes are short (usually 21 to 24 bp) double-stranded RNAs (dsRNAs) with several overhanging nucleotides at both 5'- and 3'-ends. It has been found that siRNA duplexes bind the RNA-induced silencing complex (RISC) and cleave the sense strands with endonucleases. I...


Niu, X.Sun, Y.Chen, Z.Li, R.Padmanabhan, C.Ruan, J.Kreuze, J.F.Ling, K.S.Fei, Z.J.Gao, S.[Using small RNA-seq data to detect siRNA duplexes induced by plant viruses.]Using small RNA-seq data to detect siRNA duplexes induced by plant viruses.
Abad, J.A.Li, R.Fuentes, S.Kreuze, J.F.Loschinkohl, C.Bandla, P.[Identification by deep sequencing of a "Caulimo-like" virus in a potato botanical seed germplam accession imported from South America.]Identification by deep sequencing of a "Caulimo-like" virus in a potato botanical seed germplam accession imported from South America.
Wang, M.Abad, J.A.Fuentes, S.Li, R.[Complete genome sequence of the original Taiwanese isolate of sweet potato latent virus and its relationship to other potyviruses infecting sweet potato.]Complete genome sequence of the original Taiwanese isolate of sweet potato latent virus and its relationship to other potyviruses infecting sweet potato.

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