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Bocco, R.Lorieux, MathiasSeck, P.Futakuchi, K.Manneh, BaboucarrBaimey, H.Ndjiondjop, Marie-Noel[Agro-morphological characterization of a population of introgression lines derived from crosses between IR 64 (Oryza sativa indica) and TOG 5681 (Oryza glaberrima) for drought tolerance]Agro-morphological characterization of a population of introgression lines derived from crosses between IR 64 (Oryza sativa indica) and TOG 5681 (Oryza glaberrima) for drought tolerance

MapDisto is a program for mapping genetic markers in experimental segregating populations like backcross, F2, doubled haploids, single-seed descent and highly recombinant lines.
One of its specificities is to propose recombination fraction estimates in case of segregation distortion.
MapDisto has...


Lorieux, Mathias[Mapdisto: fast and efficient computation of genetic linkage maps]Mapdisto: fast and efficient computation of genetic linkage maps
Ogawa, SatoshiValencia, Milton OrlandoLorieux, MathiasArbeláez Vélez, Juan D.McCouch, Susan R.Ishitani, ManabuGómez Selvaraj, Michael[Identification of QTLs associated with agronomic performance under nitrogen-deficient conditions using chromosome segment substitution lines of a wild rice relative, Oryza rufipogon]Identification of QTLs associated with agronomic performance under nitrogen-deficient conditions using chromosome segment substitution lines of a wild rice relative, Oryza rufipogon
Duitama, JorgeSilva, AlexanderSanabria, YamidCruz, Daniel FelipeQuintero, ConstanzaBallen, CarolinaLorieux, MathiasScheffler, BrianFarmer, AndrewTorres Castro, Edgar AlonsoOard, JamesTohme, Joseph M.[Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection]Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection

Motivation: Genotyping by sequencing (GBS) generates datasets that are challenging to handle by current genetic mapping software with graphical interface. Geneticists need new user-friendly computer programs that can analyze GBS data on desktop computers. This requires improvements in computation...


Heffelfinger, ChristopherFragoso, Christopher A.Lorieux, Mathias[Constructing linkage maps in the genomics era with MapDisto 2.0]Constructing linkage maps in the genomics era with MapDisto 2.0

Spindel, JenniferWright, MarkChen, CharlesCobb, JoshuaGage, JosephHarrington, SandraLorieux, MathiasAhmadi, NourollahMcCouch, Susan[Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations]Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

With the aim to find new sources of resistance to rice hoja blanca (white leaf) disease, transmitted by the insect Tagosodes orizicolus, 660 genotypes were evaluated under greenhouse and field conditions. Seven resistant genotypes were identified, and genomic studies were performed to demonstrate...


Cruz Gallego, MaribelRebolledo, María CamilaCuasquer, Juan B.Cruz, Daniel FelipePeña-Fernández, Alexandra LorenaQuintero, ConstanzaSilva-Córdoba, AlexanderÁlvarez, María FernandaJojoa-Cruz, SebastiánLorieux, MathiasStuart, Jeffrey J.Correa, Fernando[Identification of new sources of resistance to RHBV- rice hoja blanca virus = Identificación de nuevas fuentes de resistencia al virus hoja blanca en arroz-RHBV]Identification of new sources of resistance to RHBV- rice hoja blanca virus = Identificación de nuevas fuentes de resistencia al virus hoja blanca en arroz-RHBV

Describing the genetic diversity in the gene pool of crops will provide breeders with novel resources for varietal improvement. Nested Association Mapping (NAM) populations are uniquely suited for characterizing parental diversity through the shuffling and fixation of parental haplotypes. Here, w...


Fragoso, Christopher A.Moreno, MariaWang, ZuohengHeffelfinger, ChristopherArbeláez, Lady J.Aguirre, John A.Franco, NataliaRomero, Luz E.Labadie, KarineZhao, HongyuDellaporta, Stephen L.Lorieux, Mathias[Genetic Architecture of a Rice Nested Association Mapping Population]Genetic Architecture of a Rice Nested Association Mapping Population
Pariasca-Tanaka, JuanLorieux, MathiasHe, ChunlinMcCouch, Susan R.Thomson, Michael JWissuwa, Matthias[Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima O. sativa interspecific crosses]Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima O. sativa interspecific crosses
Arbeláez Vélez, Juan D.Moreno, Laura T.Singh, NamrataTung, Chih-WeiMaron, Lyza G.Ospina, YolimaMartínez, César P.Grenier, CécileLorieux, MathiasMcCouch, Susan R.[Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga]Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga

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