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The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics ...


Cooper, L.Meier, A.Laporte, M-A.Elser, J.L.Mungall, C.Sinn, B.T.Cavaliere, D.Carbon, S.Dunn, N.A.Smith, B.Qu, B.Preece, J.Zhang, E.Todorovic, S.Gkouto, G.Doonan, J.H.Stevenson, D.W.Arnaud, ElizabethJaiswal, P.[The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics]The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

Logical definitions, in particular those following the Entity-Quality approach, are increasingly used to drive automated classification of phenotypes and integrate phenotypes across species semantically. Over the years, the lack of consistent and widespread use of common standards resulted in con...


Matentzoglu, N.Balhoff, J.Bello, S.Boerkoel, C.Bradford, Y.Carmody, L.Cooper, L.Grove, C.Harris, N.Köhler, S.Laporte, M-A.Laulederkind, S.Lee, R.Mazandu, G.McMurry, J.Mungall, C.Osumi-Sutherland, D.Pilgrim, C.Rageth, K.Robb, S.Robinson, P.Segerdell, E.Thessen, A.Vasilevsky, N.Zhang, X.Haendel, M.[Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species. Workshop Report]Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species. Workshop Report

Around the world, a small number of plant species serve as the primary source of food for the human population, yet these crops are vulnerable to multiple stressors, such as diseases, nutrient deficiencies and unfavorable environmental conditions. Traditional breeding methods for plant improvemen...


Jaiswal, P.Cooper, L.Elser, J.L.Meier, A.Laporte, M-A.Mungall, C.Smith, B.Johnson, E.K.S.Seymour, M.Preece, J.Xu, X.Kitchen, R.S.Qu, B.Zhang, E.Arnaud, ElizabethCarbon, S.Todorovic, S.Stevenson, D.W.[Planteome: A resource for common reference ontologies and applications for plant biology]Planteome: A resource for common reference ontologies and applications for plant biology

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