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Droc, GaëtanLariviere, D.Guignon, V.Yahiaoui, N.This, D.Garsmeur, O.Dereeper, A.Hamelin, C.Argout, X.Dufayard, Jean-FrançoisLengelle, J.Baurens, F.C.Cenci, A.Pitollat, B.D'Hont, A.Ruiz, M.Rouard, M.Bocs, S.[The Banana Genome Hub]The Banana Genome Hub

Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on m...


Selby, P.Abbeloos, R.Backlund, J.E.Guignon, V.Laporte, M-A.Rouard, M.[BrAPI - an application programming interface for plant breeding applications]BrAPI - an application programming interface for plant breeding applications

Unraveling the genetic diversity held in genebanks on a large scale is underway, due to advances in Next-generation sequence (NGS) based technologies that produce high-density genetic markers for a large number of samples at low cost. Genebank users should be in a position to identify and select ...


Ruas, M.Guignon, V.Sempere, G.Sardos, J.Chase, R.Hueber, Y.Duvergey, H.Andrieu, A.Hazekamp, T.Daniells, J.Gueco, L.Ibobondji, L.Irish, B.Jenny, C.Muhangi, S.Paofa, J.Thiemele, D.Tumuhimbise, R.Sandoval, J.Sutanto, A.Vangu Paka, G.Yi, G.Kempenaers, E.Houwe, I. van denRoux, N.Rouard, M.[MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data]MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data

The study of genetic variations is the basis of many research domains in biology. From genome structure to population dynamics, many applications involve the use of genetic variants. The advent of next-generation sequencing technologies led to such a flood of data that the daily work of scientist...


Sempéré, G.Pétel, A.Rouard, M.Frouin, J.Hueber, Y.De Bellis, F.Larmande, P.[Gigwa v2—Extended and improved genotype investigator]Gigwa v2—Extended and improved genotype investigator

Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional an...


Guignon, V.Droc, GaëtanAlaux, M.Baurens, F.C.Garsmeur, O.Poiron, C.Carver, T.Rouard, M.Bocs, S.[Chado Controller: advanced annotation management with a community annotation system]Chado Controller: advanced annotation management with a community annotation system

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