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Plant breeding consists in the creation and selection of new genotypes. This involves not only keeping records across generations and environments but also accommodating data of increasing resolution on genotypes, phenotypes, and growth environments. Some such high-resolution characterization met...


Simon, R.Córdova, R.Hualla, V.Salas, E.Tejada, S.T.Flores, M.R.Pollreich, S.Haan, Stef deBonierbale, Merideth W.[Integrating and sharing accession-level and omics-size genotype, phenotype and environmental data: Experiences at the International Potato Center (CIP).]Integrating and sharing accession-level and omics-size genotype, phenotype and environmental data: Experiences at the International Potato Center (CIP).

Plant breeders and educators working with the International Potato Center (CIP) needed freely available statistical tools. In response, we created first a set of scripts for specific tasks using the open source statistical software R. Based on this we eventually compiled the R package agricolae a...


Mendiburu, F. deSimon, R.[Agricolae - Ten years of an open source statistical tool for experiments in breeding, agriculture and biology.]Agricolae - Ten years of an open source statistical tool for experiments in breeding, agriculture and biology.

Crop ontologies have been identified under the Generation Challenge Program and at the International Potato Center (CIP) as a crucial tool for managing and analyzing crop related information. Here we report progress on applying ontological concepts on sweetpotato traits important for breeders and...


Simon, R.Hualla, V.Eyzaguirre, R.Córdova, R.Mwanga, R.O.M.Rossel, G.Gruneberg, W.J.[Progress in developing a sweetpotato ontology for breeders]Progress in developing a sweetpotato ontology for breeders

The potato ontology is part of a community effort to establish a set of related crop ontologies. The advantage of an ontology is that both humans and software applications can understand a data domain. This will allow the application of numerical or data mining techniques that may help to uncover...


Simon, R.Hualla, V.Salas, E.Gómez, R.Córdova, R.Haan, Stef deBonierbale, Merideth W.[Progress in developing a potato ontology for breeders.]Progress in developing a potato ontology for breeders.

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