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We report the first identification of novel viruses, and sequence of an entire viral genome, by a single step of high-throughput parallel sequencing of small RNAs from diseased, as well as symptomless plants. Contigs were assembled from sequenced total siRNA from plants using small sequence assem...


Kreuze, J.F.Pérez, A.Untiveros, M.Quispe, D.Fuentes, S.Barker, I.Simon, R.[Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses.]Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses.

Sharma, S.K.Bolser, D.Boer, J. de.Sonderkaer, M.Amoros, W.Carboni, M.F.D'Ambrosio, J.M.Cruz, G. de laGenova, A. diDouches, D.S.Eguiluz, M.Guo, X.Guzmán, F.Hackett, C.A.Hamilton, J.P.Li, G.Li, Y.Lozano, R.Maass, A.Marshall, D.Martínez, D.McLean, K.Mejia, N.Milne, L.Munive, S.Nagy, I.Ponce, O.Ramírez, M.Simon, R.Thomson, S.J.Torres, Y.Waugh, R.Zhang, Z.Huang, S.Visser, Richard G.F.Bachem, C.W.B.Sagredo, B.Feingold, S.E.Orjeda, G.Veilleux, R.E.Bonierbale, Merideth W.Jacobs, J.M.E.Milbourne, D.Martin, D.M.A.Bryan, G.J.[Construction of reference chromosome-scale pseudomolecules for potato: Integrating the potato genome with genetic and physical maps.]Construction of reference chromosome-scale pseudomolecules for potato: Integrating the potato genome with genetic and physical maps.

Lindqvist-Kreuze, HaneleCho, K.Portal, L.Rodríguez, F.Simon, R.Mueller, L.A.Spooner, D.M.Bonierbale, Merideth W.[Linking the potato genome to the conserved ortholog set (COS) markers.]Linking the potato genome to the conserved ortholog set (COS) markers.

Conserved ortholog set (COS) markers are useful for genetic mapping across diverse taxa, including the Solanaceae. We amplified over 300 COS markers from diverse set of Solanum germplasm, sequenced them and aligned into the whole genome sequence of potato. We also mapped a set of COS markers gene...


Lindqvist-Kreuze, HanelePortal, L.Rodríguez, F.Simon, R.Mueller, L.Spooner, D.Bonierbale, Merideth W.[In silico mapping of Conserved Ortholog Set (COS) markers in the potato genome.]In silico mapping of Conserved Ortholog Set (COS) markers in the potato genome.

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