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Internal Document 2019

Autor: CGIAR Platform for Big Data in Agriculture

Given the multi-disciplinary nature of the CGIAR Big Data For Agriculture, the Ontologyies Community of Practice (CoP) will span the knowledge domains of importance for the platform with the objective of establishing best practices, guidelines in the selection, use and application of semantics fo...

Enlace original: https://cgspace.cgiar.org/handle/10568/101569

Investigación en Agricultura
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CGIAR Platform for Big Data in Agriculture ,  [BIG DATA Ontologies Community of Practice – Work Plan 2019] ,  BIG DATA Ontologies Community of Practice – Work Plan 2019
Conference Paper 2016

Autor: Valette, L. Pietragalla, J. Laporte, M-A. Afolabi, A. Boukar, O. Cannon, Steven B. Diers, D.W. Dreher, K.A. Gaur, Pooran M. Guerrero, A.F. Hash, C.T. Hualla, V. Inoussa, D. Kalberer, S.R. Kondombo-Barro, C.P. Kumar, S. López Montes, A. Menda, N. Nelson, R. Ofodile, S. Patil, S. Prasad, P. Rajendran, K. Rami, J.F. Rathore, A. Sackville Hamilton, N.R. Reinhard Simon, Guvener Selim Teme, N. Weltzien, Eva Arnaud, Elizabeth Shrestha, R.

The Crop Ontology (CO, http://www.cropontology.org/) is a resource of the Integrated Breeding Platform (IBP, http://integratedbreeding.net/) providing breeders with crop specific terms for fieldbook edition and data annotation. Until Mai 2015, a plant phenotype was annotated with 3 CO identifiers...

Enlace original: https://cgspace.cgiar.org/handle/10568/78758

Investigación en Agricultura
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Valette, L. ,  Pietragalla, J. ,  Laporte, M-A. ,  Afolabi, A. ,  Boukar, O. ,  Cannon, Steven B. ,  Diers, D.W. ,  Dreher, K.A. ,  Gaur, Pooran M. ,  Guerrero, A.F. ,  Hash, C.T. ,  Hualla, V. ,  Inoussa, D. ,  Kalberer, S.R. ,  Kondombo-Barro, C.P. ,  Kumar, S. ,  López Montes, A. ,  Menda, N. ,  Nelson, R. ,  Ofodile, S. ,  Patil, S. ,  Prasad, P. ,  Rajendran, K. ,  Rami, J.F. ,  Rathore, A. ,  Sackville Hamilton, N.R. ,  Reinhard Simon, Guvener Selim ,  Teme, N. ,  Weltzien, Eva ,  Arnaud, Elizabeth ,  Shrestha, R. ,  [Crop ontology: integration of standard variables] ,  Crop ontology: integration of standard variables
Conference Paper 2016

Autor: Jonquet, C. Dzale-Yeumo, E. Arnaud, Elizabeth Larmande, Pierre Toulet, A. Laporte, M-A.

Our project is to develop and support a reference ontology repository for the agronomic domain. By reusing the NCBO BioPortal technology, we have already designed and implemented a prototype ontology repository for plants and a few crops. We plan to turn that prototype into a real service to the ...

Enlace original: https://cgspace.cgiar.org/handle/10568/78753

Investigación en Agricultura
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Jonquet, C. ,  Dzale-Yeumo, E. ,  Arnaud, Elizabeth ,  Larmande, Pierre ,  Toulet, A. ,  Laporte, M-A. ,  [AgroPortal: a proposition for ontology-based services in the agronomic domain] ,  AgroPortal: a proposition for ontology-based services in the agronomic domain
Poster 2016

Autor: Valette, L. Pietragalla, J. Laporte, M-A. Afolabi, A. Boukar, O. Cannon, Steven B. Diers, D.W. Dreher, K.A. Gaur, Pooran M. Guerrero, A.F. Hash, C.T. Hualla, V. Inoussa, D. Kalberer, S.R. Kondombo-Barro, C.P. Kumar, S. López Montes, A. Menda, N. Nelson, R. Ofodile, S. Patil, S. Prasad, P. Rajendran, K. Rami, J.F. Rathore, A. Sackville Hamilton, N.R. Reinhard Simon, Guvener Selim Teme, N. Weltzien, Eva Arnaud, Elizabeth Shrestha, R.
Enlace original: https://cgspace.cgiar.org/handle/10568/78763

Investigación en Agricultura
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Valette, L. ,  Pietragalla, J. ,  Laporte, M-A. ,  Afolabi, A. ,  Boukar, O. ,  Cannon, Steven B. ,  Diers, D.W. ,  Dreher, K.A. ,  Gaur, Pooran M. ,  Guerrero, A.F. ,  Hash, C.T. ,  Hualla, V. ,  Inoussa, D. ,  Kalberer, S.R. ,  Kondombo-Barro, C.P. ,  Kumar, S. ,  López Montes, A. ,  Menda, N. ,  Nelson, R. ,  Ofodile, S. ,  Patil, S. ,  Prasad, P. ,  Rajendran, K. ,  Rami, J.F. ,  Rathore, A. ,  Sackville Hamilton, N.R. ,  Reinhard Simon, Guvener Selim ,  Teme, N. ,  Weltzien, Eva ,  Arnaud, Elizabeth ,  Shrestha, R. ,  [Crop ontology: integration of standard variables] ,  Crop ontology: integration of standard variables
Poster 2016

Autor: Jonquet, C. Dzale-Yeumo, E. Arnaud, Elizabeth Larmande, Pierre Toulet, A. Laporte, M-A.
Enlace original: https://cgspace.cgiar.org/handle/10568/78752

Investigación en Agricultura
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Jonquet, C. ,  Dzale-Yeumo, E. ,  Arnaud, Elizabeth ,  Larmande, Pierre ,  Toulet, A. ,  Laporte, M-A. ,  [AgroPortal: a proposition for ontology-based services in the agronomic domain] ,  AgroPortal: a proposition for ontology-based services in the agronomic domain
Conference Paper 2016

Autor: Jonquet, C. Toulet, A. Arnaud, Elizabeth Aubin, S. Dzale-Yeumo, E. Emonet, V. Graybeal, J. Musen, M.A. Pommier, C. Larmande, Pierre

Many vocabularies and ontologies are produced to represent and annotate agronomic data. By reusing the NCBO BioPortal technology, we have already designed and implemented an advanced prototype ontology repository for the agronomy domain. We plan to turn that prototype into a real service to the c...

Enlace original: https://cgspace.cgiar.org/handle/10568/78778

Investigación en Agricultura
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Jonquet, C. ,  Toulet, A. ,  Arnaud, Elizabeth ,  Aubin, S. ,  Dzale-Yeumo, E. ,  Emonet, V. ,  Graybeal, J. ,  Musen, M.A. ,  Pommier, C. ,  Larmande, Pierre ,  [Reusing the NCBO BioPortal technology for agronomy to build AgroPortal] ,  Reusing the NCBO BioPortal technology for agronomy to build AgroPortal
Conference Paper 2013

Autor: Simon, R. Bonierbale, Merideth W.

The potato ontology is being developed as part of the crop ontology (CO) effort amongst CGIAR centers. The CO serves primarily to harmonize phenotypic and genotypic data for semantic compatibility across diverse, distributed data types; and ontology in general, facilitates the use of terms by bot...

Enlace original: https://cgspace.cgiar.org/handle/10568/57034

Investigación en Agricultura
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Simon, R. ,  Bonierbale, Merideth W. ,  [Status of the draft potato ontology.] ,  Status of the draft potato ontology.
Report 2019

Autor: Matentzoglu, N Balhoff, J.P. Bello, S.M. Bradford, Y.M. Carmody, L.C. Cooper, L.D. Laporte, M-A.

The central purpose of this workshop was to bring together users and developers of phenotype ontologies and to provide them with a forum to share, learn and debate. The second edition of the workshop further aimed to address two of the fundamental bottlenecks identified in the course of these com...

Enlace original: https://cgspace.cgiar.org/handle/10568/106627

Investigación en Agricultura
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Matentzoglu, N ,  Balhoff, J.P. ,  Bello, S.M. ,  Bradford, Y.M. ,  Carmody, L.C. ,  Cooper, L.D. ,  Laporte, M-A. ,  [Phenotype Ontologies Traversing All the Organisms (POTATO) workshop: 2nd edition.] ,  Phenotype Ontologies Traversing All the Organisms (POTATO) workshop: 2nd edition.
Journal Article 2012

Autor: Guignon, V. Droc, Gaëtan Alaux, M. Baurens, F.C. Garsmeur, O. Poiron, C. Carver, T. Rouard, M. Bocs, S.

Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional an...

Enlace original: https://cgspace.cgiar.org/handle/10568/35841

Investigación en Agricultura
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Guignon, V. ,  Droc, Gaëtan ,  Alaux, M. ,  Baurens, F.C. ,  Garsmeur, O. ,  Poiron, C. ,  Carver, T. ,  Rouard, M. ,  Bocs, S. ,  [Chado Controller: advanced annotation management with a community annotation system] ,  Chado Controller: advanced annotation management with a community annotation system
Poster 2011

Autor: Rouard, M. Guignon, V. Walde, C. Droc, Gaëtan Zmasek, C. Dufayard, Jean-François Conte, M.G.
Enlace original: https://cgspace.cgiar.org/handle/10568/67545

Investigación en Agricultura
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Rouard, M. ,  Guignon, V. ,  Walde, C. ,  Droc, Gaëtan ,  Zmasek, C. ,  Dufayard, Jean-François ,  Conte, M.G. ,  [GreenPhylDB: phylogenomic resources for comparative and functional genomics in plants] ,  GreenPhylDB: phylogenomic resources for comparative and functional genomics in plants

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