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Conference Paper 2016

Planteome: A resource for common reference ontologies and applications for plant biology

Autor: Jaiswal, P. Cooper, L. Elser, J.L. Meier, A. Laporte, M-A. Mungall, C. Smith, B. Johnson, E.K.S. Seymour, M. Preece, J. Xu, X. Kitchen, R.S. Qu, B. Zhang, E. Arnaud, Elizabeth Carbon, S. Todorovic, S. Stevenson, D.W.

Around the world, a small number of plant species serve as the primary source of food for the human population, yet these crops are vulnerable to multiple stressors, such as diseases, nutrient deficiencies and unfavorable environmental conditions. Traditional breeding methods for plant improvemen...

Enlace original: https://cgspace.cgiar.org/handle/10568/78564

Investigación en Agricultura

CROPS

ONTOLOGY

DATA

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Jaiswal, P. , Cooper, L. , Elser, J.L. , Meier, A. , Laporte, M-A. , Mungall, C. , Smith, B. , Johnson, E.K.S. , Seymour, M. , Preece, J. , Xu, X. , Kitchen, R.S. , Qu, B. , Zhang, E. , Arnaud, Elizabeth , Carbon, S. , Todorovic, S. , Stevenson, D.W. , [Planteome: A resource for common reference ontologies and applications for plant biology] , Planteome: A resource for common reference ontologies and applications for plant biology

Conference Paper 2016

The Crop Ontology: a source of standard traits and variables for breeding and agronomy

Autor: Arnaud, Elizabeth Valette, L. Pietragalla, J. Laporte, M-A. Aubert, C. Devare, Medha McLaren, G. Ribaut, J-M.

The Crop Ontology is a service of the Integrated Breeding Platform (www.integratedbreeding.net) in collaboration with the CGIAR and partners and under the leadership of Bioversity international. The Crop Ontology (www.cropontology.org) provides harmonized and validated breeders’ trait names, mea...

Enlace original: https://cgspace.cgiar.org/handle/10568/78612

Investigación en Agricultura

ONTOLOGY

STANDARDS

DATA

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Arnaud, Elizabeth , Valette, L. , Pietragalla, J. , Laporte, M-A. , Aubert, C. , Devare, Medha , McLaren, G. , Ribaut, J-M. , [The Crop Ontology: a source of standard traits and variables for breeding and agronomy] , The Crop Ontology: a source of standard traits and variables for breeding and agronomy

Poster 2014-03-31

Progress in developing a sweetpotato ontology for breeders

Autor: Simon, R. Hualla, V. Eyzaguirre, R. Córdova, R. Mwanga, R.O.M. Rossel, G. Gruneberg, W.J.

Crop ontologies have been identified under the Generation Challenge Program and at the International Potato Center (CIP) as a crucial tool for managing and analyzing crop related information. Here we report progress on applying ontological concepts on sweetpotato traits important for breeders and...

Enlace original: https://cgspace.cgiar.org/handle/10568/68636

Investigación en Agricultura

SWEET POTATOES

ONTOLOGY

BREEDING

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Simon, R. , Hualla, V. , Eyzaguirre, R. , Córdova, R. , Mwanga, R.O.M. , Rossel, G. , Gruneberg, W.J. , [Progress in developing a sweetpotato ontology for breeders] , Progress in developing a sweetpotato ontology for breeders

Poster 2014-03-31

Progress in developing a potato ontology for breeders.

Autor: Simon, R. Hualla, V. Salas, E. Gómez, R. Córdova, R. Haan, Stef de Bonierbale, Merideth W.

The potato ontology is part of a community effort to establish a set of related crop ontologies. The advantage of an ontology is that both humans and software applications can understand a data domain. This will allow the application of numerical or data mining techniques that may help to uncover...

Enlace original: https://cgspace.cgiar.org/handle/10568/68637

Investigación en Agricultura

POTATOES

ONTOLOGY

BREEDING

Listar archivos Citar Enlace permanente

Simon, R. , Hualla, V. , Salas, E. , Gómez, R. , Córdova, R. , Haan, Stef de , Bonierbale, Merideth W. , [Progress in developing a potato ontology for breeders.] , Progress in developing a potato ontology for breeders.

Journal Article 2017

Developing data interoperability using standards: A wheat community use case

Autor: Dzale-Yeumo, E. Alaux, M. Arnaud, Elizabeth Aubin, S. Baumann, U. Buche, P. Cooper, L. Cwiek-Kupczynska, H. Davey, R.P. Fulss, R.A. Jonquet, C. Laporte, M-A. Larmande, Pierre Pommier, C. Protonotarios, V. Reverte, C. Shrestha, R. Subirats, I. Venkatesan, A. Whan, A. Quesneville, H.

In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop wheat data interoperability guidelines. Interoperability is the ability of two or more systems and devices to cooperate and exchange data, and interpret that shared informa...

Enlace original: https://cgspace.cgiar.org/handle/10568/89854

Investigación en Agricultura

ONTOLOGY

STANDARDS

TERMINOLOGY

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Dzale-Yeumo, E. , Alaux, M. , Arnaud, Elizabeth , Aubin, S. , Baumann, U. , Buche, P. , Cooper, L. , Cwiek-Kupczynska, H. , Davey, R.P. , Fulss, R.A. , Jonquet, C. , Laporte, M-A. , Larmande, Pierre , Pommier, C. , Protonotarios, V. , Reverte, C. , Shrestha, R. , Subirats, I. , Venkatesan, A. , Whan, A. , Quesneville, H. , [Developing data interoperability using standards: A wheat community use case] , Developing data interoperability using standards: A wheat community use case

Conference Paper 2013

The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.

Autor: Arnaud, Elizabeth Shrestha, R. Kulakow, P.A. Bakare, M. López Montes, A. Ofodile, S. Reddy T.P. Prasad, P. Shah, Tushaar Hash, C.T. Weltzien, Eva Sissoko, I. Guerrero, A.F. Simon, R. Borja Borja, N.F. Ramil, M. Matteis, L. Skofic, M. Hazekamp, T. McLaren, G. Cooper, L. Jaiswal, P. Menda, N. Nelson, R. Grant, D. Bastow, R. Mueller, L. Rami, J.F.

The Crop Ontology (CO) of the Generation Challenge Program (GCP) (http://cropontology.org/) currently contains eleven crop-specific ontologies and has been developed for the Integrated Breeding Platform (IBP) (https://www.integratedbreeding.net/) by several CGIAR centers. The CO provides validate...

Enlace original: https://cgspace.cgiar.org/handle/10568/57036

Investigación en Agricultura

POTATOES

ONTOLOGY

PHENOTYPES

Citar Enlace permanente

Arnaud, Elizabeth , Shrestha, R. , Kulakow, P.A. , Bakare, M. , López Montes, A. , Ofodile, S. , Reddy T.P. , Prasad, P. , Shah, Tushaar , Hash, C.T. , Weltzien, Eva , Sissoko, I. , Guerrero, A.F. , Simon, R. , Borja Borja, N.F. , Ramil, M. , Matteis, L. , Skofic, M. , Hazekamp, T. , McLaren, G. , Cooper, L. , Jaiswal, P. , Menda, N. , Nelson, R. , Grant, D. , Bastow, R. , Mueller, L. , Rami, J.F. , [The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.] , The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.

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Resultados de búsqueda

Planteome: A resource for common reference ontologies and applications for plant biology

The Crop Ontology: a source of standard traits and variables for breeding and agronomy

Progress in developing a sweetpotato ontology for breeders

[79075_Poster.pdf]

Progress in developing a potato ontology for breeders.

[79076_poster.pdf]

Developing data interoperability using standards: A wheat community use case

[DzaleYeumo_2017.pdf]

The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.