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Conference Paper 2013

Autor: Matteis L Chibon P Espinosa, H. Skofic M Finkers R Bruskiewich, R. Hyman, Glenn Arnaud, Elizabeth

A recurrent issue for data integration is the lack of a common and structured vocabulary used by different parties to describe their data sets. The Crop Ontology (www.cropontology.org) project aims to provide a central place where the crop community can gather to generate such standardized vocabu...

Enlace original: https://cgspace.cgiar.org/handle/10568/52052

Investigación en Agricultura
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Matteis L ,  Chibon P ,  Espinosa, H. ,  Skofic M ,  Finkers R ,  Bruskiewich, R. ,  Hyman, Glenn ,  Arnaud, Elizabeth ,  [Crop ontology: vocabulary for crop-related concepts] ,  Crop ontology: vocabulary for crop-related concepts
Conference Paper 2018

Autor: Endara L. Burleigh G. Cooper L. Jaiswal, P. Laporte, M-A.

Assembling large-scale phenotypic datasets for evolutionary and biodiversity studies of plants can be extremely difficult and time consuming. New semi-automated Natural Language Processing (NLP) pipelines can extract phenotypic data from taxonomic descriptions, and their performance can be enhanc...

Enlace original: https://cgspace.cgiar.org/handle/10568/100813

Investigación en Agricultura
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Endara L. ,  Burleigh G. ,  Cooper L. ,  Jaiswal, P. ,  Laporte, M-A. ,  [A Natural Language Processing Pipeline to extract phenotypic data from formal taxonomic descriptions with a focus on flagellate plants] ,  A Natural Language Processing Pipeline to extract phenotypic data from formal taxonomic descriptions with a focus on flagellate plants
Conference Paper 2016

Autor: Valette, L. Pietragalla, J. Laporte, M-A. Afolabi, A. Boukar, O. Cannon, Steven B. Diers, D.W. Dreher, K.A. Gaur, Pooran M. Guerrero, A.F. Hash, C.T. Hualla, V. Inoussa, D. Kalberer, S.R. Kondombo-Barro, C.P. Kumar, S. López Montes, A. Menda, N. Nelson, R. Ofodile, S. Patil, S. Prasad, P. Rajendran, K. Rami, J.F. Rathore, A. Sackville Hamilton, N.R. Reinhard Simon, Guvener Selim Teme, N. Weltzien, Eva Arnaud, Elizabeth Shrestha, R.

The Crop Ontology (CO, http://www.cropontology.org/) is a resource of the Integrated Breeding Platform (IBP, http://integratedbreeding.net/) providing breeders with crop specific terms for fieldbook edition and data annotation. Until Mai 2015, a plant phenotype was annotated with 3 CO identifiers...

Enlace original: https://cgspace.cgiar.org/handle/10568/78758

Investigación en Agricultura
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Valette, L. ,  Pietragalla, J. ,  Laporte, M-A. ,  Afolabi, A. ,  Boukar, O. ,  Cannon, Steven B. ,  Diers, D.W. ,  Dreher, K.A. ,  Gaur, Pooran M. ,  Guerrero, A.F. ,  Hash, C.T. ,  Hualla, V. ,  Inoussa, D. ,  Kalberer, S.R. ,  Kondombo-Barro, C.P. ,  Kumar, S. ,  López Montes, A. ,  Menda, N. ,  Nelson, R. ,  Ofodile, S. ,  Patil, S. ,  Prasad, P. ,  Rajendran, K. ,  Rami, J.F. ,  Rathore, A. ,  Sackville Hamilton, N.R. ,  Reinhard Simon, Guvener Selim ,  Teme, N. ,  Weltzien, Eva ,  Arnaud, Elizabeth ,  Shrestha, R. ,  [Crop ontology: integration of standard variables] ,  Crop ontology: integration of standard variables
Conference Paper 2016

Autor: Jonquet, C. Dzale-Yeumo, E. Arnaud, Elizabeth Larmande, Pierre Toulet, A. Laporte, M-A.

Our project is to develop and support a reference ontology repository for the agronomic domain. By reusing the NCBO BioPortal technology, we have already designed and implemented a prototype ontology repository for plants and a few crops. We plan to turn that prototype into a real service to the ...

Enlace original: https://cgspace.cgiar.org/handle/10568/78753

Investigación en Agricultura
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Jonquet, C. ,  Dzale-Yeumo, E. ,  Arnaud, Elizabeth ,  Larmande, Pierre ,  Toulet, A. ,  Laporte, M-A. ,  [AgroPortal: a proposition for ontology-based services in the agronomic domain] ,  AgroPortal: a proposition for ontology-based services in the agronomic domain
Conference Paper 2016

Autor: Jonquet, C. Toulet, A. Arnaud, Elizabeth Aubin, S. Dzale-Yeumo, E. Emonet, V. Graybeal, J. Musen, M.A. Pommier, C. Larmande, Pierre

Many vocabularies and ontologies are produced to represent and annotate agronomic data. By reusing the NCBO BioPortal technology, we have already designed and implemented an advanced prototype ontology repository for the agronomy domain. We plan to turn that prototype into a real service to the c...

Enlace original: https://cgspace.cgiar.org/handle/10568/78778

Investigación en Agricultura
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Jonquet, C. ,  Toulet, A. ,  Arnaud, Elizabeth ,  Aubin, S. ,  Dzale-Yeumo, E. ,  Emonet, V. ,  Graybeal, J. ,  Musen, M.A. ,  Pommier, C. ,  Larmande, Pierre ,  [Reusing the NCBO BioPortal technology for agronomy to build AgroPortal] ,  Reusing the NCBO BioPortal technology for agronomy to build AgroPortal
Conference Paper 2013

Autor: Simon, R. Bonierbale, Merideth W.

The potato ontology is being developed as part of the crop ontology (CO) effort amongst CGIAR centers. The CO serves primarily to harmonize phenotypic and genotypic data for semantic compatibility across diverse, distributed data types; and ontology in general, facilitates the use of terms by bot...

Enlace original: https://cgspace.cgiar.org/handle/10568/57034

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Simon, R. ,  Bonierbale, Merideth W. ,  [Status of the draft potato ontology.] ,  Status of the draft potato ontology.
Conference Paper 2016

Autor: Jaiswal, P. Cooper, L. Elser, J.L. Meier, A. Laporte, M-A. Mungall, C. Smith, B. Johnson, E.K.S. Seymour, M. Preece, J. Xu, X. Kitchen, R.S. Qu, B. Zhang, E. Arnaud, Elizabeth Carbon, S. Todorovic, S. Stevenson, D.W.

Around the world, a small number of plant species serve as the primary source of food for the human population, yet these crops are vulnerable to multiple stressors, such as diseases, nutrient deficiencies and unfavorable environmental conditions. Traditional breeding methods for plant improvemen...

Enlace original: https://cgspace.cgiar.org/handle/10568/78564

Investigación en Agricultura
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Jaiswal, P. ,  Cooper, L. ,  Elser, J.L. ,  Meier, A. ,  Laporte, M-A. ,  Mungall, C. ,  Smith, B. ,  Johnson, E.K.S. ,  Seymour, M. ,  Preece, J. ,  Xu, X. ,  Kitchen, R.S. ,  Qu, B. ,  Zhang, E. ,  Arnaud, Elizabeth ,  Carbon, S. ,  Todorovic, S. ,  Stevenson, D.W. ,  [Planteome: A resource for common reference ontologies and applications for plant biology] ,  Planteome: A resource for common reference ontologies and applications for plant biology
Conference Paper 2016

Autor: Arnaud, Elizabeth Valette, L. Pietragalla, J. Laporte, M-A. Aubert, C. Devare, Medha McLaren, G. Ribaut, J-M.

The Crop Ontology is a service of the Integrated Breeding Platform (www.integratedbreeding.net) in collaboration with the CGIAR and partners and under the leadership of Bioversity international. The Crop Ontology (www.cropontology.org) provides harmonized and validated breeders’ trait names, mea...

Enlace original: https://cgspace.cgiar.org/handle/10568/78612

Investigación en Agricultura
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Arnaud, Elizabeth ,  Valette, L. ,  Pietragalla, J. ,  Laporte, M-A. ,  Aubert, C. ,  Devare, Medha ,  McLaren, G. ,  Ribaut, J-M. ,  [The Crop Ontology: a source of standard traits and variables for breeding and agronomy] ,  The Crop Ontology: a source of standard traits and variables for breeding and agronomy
Conference Paper 2013

Autor: Arnaud, Elizabeth Shrestha, R. Kulakow, P.A. Bakare, M. López Montes, A. Ofodile, S. Reddy T.P. Prasad, P. Shah, Tushaar Hash, C.T. Weltzien, Eva Sissoko, I. Guerrero, A.F. Simon, R. Borja Borja, N.F. Ramil, M. Matteis, L. Skofic, M. Hazekamp, T. McLaren, G. Cooper, L. Jaiswal, P. Menda, N. Nelson, R. Grant, D. Bastow, R. Mueller, L. Rami, J.F.

The Crop Ontology (CO) of the Generation Challenge Program (GCP) (http://cropontology.org/) currently contains eleven crop-specific ontologies and has been developed for the Integrated Breeding Platform (IBP) (https://www.integratedbreeding.net/) by several CGIAR centers. The CO provides validate...

Enlace original: https://cgspace.cgiar.org/handle/10568/57036

Investigación en Agricultura
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Arnaud, Elizabeth ,  Shrestha, R. ,  Kulakow, P.A. ,  Bakare, M. ,  López Montes, A. ,  Ofodile, S. ,  Reddy T.P. ,  Prasad, P. ,  Shah, Tushaar ,  Hash, C.T. ,  Weltzien, Eva ,  Sissoko, I. ,  Guerrero, A.F. ,  Simon, R. ,  Borja Borja, N.F. ,  Ramil, M. ,  Matteis, L. ,  Skofic, M. ,  Hazekamp, T. ,  McLaren, G. ,  Cooper, L. ,  Jaiswal, P. ,  Menda, N. ,  Nelson, R. ,  Grant, D. ,  Bastow, R. ,  Mueller, L. ,  Rami, J.F. ,  [The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.] ,  The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.

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