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Journal Article 2017

Autor: Jonquet, C. Toulet, A. Arnaud, Elizabeth Aubin, S. Dzale-Yeumo, E. Emonet, V. Graybeal, J. Laporte, M-A. Musen, M.A. Pesce, V. Larmande, Pierre

Many vocabularies and ontologies are produced to represent and annotate agronomic data. However, those ontologies are spread out, in different formats, of different size, with different structures and from overlapping domains. Therefore, there is need for a common platform to receive and host the...

Enlace original: https://cgspace.cgiar.org/handle/10568/89904

Investigación en Agricultura
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Jonquet, C. ,  Toulet, A. ,  Arnaud, Elizabeth ,  Aubin, S. ,  Dzale-Yeumo, E. ,  Emonet, V. ,  Graybeal, J. ,  Laporte, M-A. ,  Musen, M.A. ,  Pesce, V. ,  Larmande, Pierre ,  [AgroPortal: a vocabulary and ontology repository for agronomy] ,  AgroPortal: a vocabulary and ontology repository for agronomy
Journal Article 2017

Autor: Garnier, E. Stahl, U. Laporte, M-A. Kattge, J. Mougenot, I. Kuhn, I. Laporte, B. Amiaud, B. Ahrestani, F.S. Bonisch, G. Bunker, D.E. Cornelissen, J.H.C. Díaz, S. Enquist, B.J. Gachet, S. Jaureguiberry, P. Kleyer, M. Lavorel, S. Maicher, L. Pérez Harguindeguy, N. Poorter, H. Schildhauer, M. Shipley, B. Violle, C. Weiher, E. Wirth, C. Wright, I.J. Klotz, S.
Enlace original: https://cgspace.cgiar.org/handle/10568/79467

Investigación en Agricultura
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Garnier, E. ,  Stahl, U. ,  Laporte, M-A. ,  Kattge, J. ,  Mougenot, I. ,  Kuhn, I. ,  Laporte, B. ,  Amiaud, B. ,  Ahrestani, F.S. ,  Bonisch, G. ,  Bunker, D.E. ,  Cornelissen, J.H.C. ,  Díaz, S. ,  Enquist, B.J. ,  Gachet, S. ,  Jaureguiberry, P. ,  Kleyer, M. ,  Lavorel, S. ,  Maicher, L. ,  Pérez Harguindeguy, N. ,  Poorter, H. ,  Schildhauer, M. ,  Shipley, B. ,  Violle, C. ,  Weiher, E. ,  Wirth, C. ,  Wright, I.J. ,  Klotz, S. ,  [Towards a thesaurus of plant characteristics: an ecological contribution] ,  Towards a thesaurus of plant characteristics: an ecological contribution
Journal Article 2017

Autor: Cooper, L. Meier, A. Laporte, M-A. Elser, J.L. Mungall, C. Sinn, B.T. Cavaliere, D. Carbon, S. Dunn, N.A. Smith, B. Qu, B. Preece, J. Zhang, E. Todorovic, S. Gkouto, G. Doonan, J.H. Stevenson, D.W. Arnaud, Elizabeth Jaiswal, P.

The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics ...

Enlace original: https://cgspace.cgiar.org/handle/10568/89498

Investigación en Agricultura
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Cooper, L. ,  Meier, A. ,  Laporte, M-A. ,  Elser, J.L. ,  Mungall, C. ,  Sinn, B.T. ,  Cavaliere, D. ,  Carbon, S. ,  Dunn, N.A. ,  Smith, B. ,  Qu, B. ,  Preece, J. ,  Zhang, E. ,  Todorovic, S. ,  Gkouto, G. ,  Doonan, J.H. ,  Stevenson, D.W. ,  Arnaud, Elizabeth ,  Jaiswal, P. ,  [The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics] ,  The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
Journal Article 2018

Autor: Venkatesan, A. Tagny Ngompe, G. El Hassouni, N. Chentli, I. Guignon, V. Jonquet, C. Ruiz, M. Larmande, P.

Recent advances in high-throughput technologies have resulted in a tremendous increase in the amount of omics data produced in plant science. This increase, in conjunction with the heterogeneity and variability of the data, presents a major challenge to adopt an integrative research approach. We ...

Enlace original: https://cgspace.cgiar.org/handle/10568/99412

Investigación en Agricultura
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Venkatesan, A. ,  Tagny Ngompe, G. ,  El Hassouni, N. ,  Chentli, I. ,  Guignon, V. ,  Jonquet, C. ,  Ruiz, M. ,  Larmande, P. ,  [Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy] ,  Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy
Journal Article 2012

Autor: Guignon, V. Droc, Gaëtan Alaux, M. Baurens, F.C. Garsmeur, O. Poiron, C. Carver, T. Rouard, M. Bocs, S.

Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional an...

Enlace original: https://cgspace.cgiar.org/handle/10568/35841

Investigación en Agricultura
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Guignon, V. ,  Droc, Gaëtan ,  Alaux, M. ,  Baurens, F.C. ,  Garsmeur, O. ,  Poiron, C. ,  Carver, T. ,  Rouard, M. ,  Bocs, S. ,  [Chado Controller: advanced annotation management with a community annotation system] ,  Chado Controller: advanced annotation management with a community annotation system
Journal Article 2017

Autor: Dzale-Yeumo, E. Alaux, M. Arnaud, Elizabeth Aubin, S. Baumann, U. Buche, P. Cooper, L. Cwiek-Kupczynska, H. Davey, R.P. Fulss, R.A. Jonquet, C. Laporte, M-A. Larmande, Pierre Pommier, C. Protonotarios, V. Reverte, C. Shrestha, R. Subirats, I. Venkatesan, A. Whan, A. Quesneville, H.

In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop wheat data interoperability guidelines. Interoperability is the ability of two or more systems and devices to cooperate and exchange data, and interpret that shared informa...

Enlace original: https://cgspace.cgiar.org/handle/10568/89854

Investigación en Agricultura
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Dzale-Yeumo, E. ,  Alaux, M. ,  Arnaud, Elizabeth ,  Aubin, S. ,  Baumann, U. ,  Buche, P. ,  Cooper, L. ,  Cwiek-Kupczynska, H. ,  Davey, R.P. ,  Fulss, R.A. ,  Jonquet, C. ,  Laporte, M-A. ,  Larmande, Pierre ,  Pommier, C. ,  Protonotarios, V. ,  Reverte, C. ,  Shrestha, R. ,  Subirats, I. ,  Venkatesan, A. ,  Whan, A. ,  Quesneville, H. ,  [Developing data interoperability using standards: A wheat community use case] ,  Developing data interoperability using standards: A wheat community use case

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