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Around the world, a small number of plant species serve as the primary source of food for the human population, yet these crops are vulnerable to multiple stressors, such as diseases, nutrient deficiencies and unfavorable environmental conditions. Traditional breeding methods for plant improvemen...


Jaiswal, P.Cooper, L.Elser, J.L.Meier, A.Laporte, M-A.Mungall, C.Smith, B.Johnson, E.K.S.Seymour, M.Preece, J.Xu, X.Kitchen, R.S.Qu, B.Zhang, E.Arnaud, ElizabethCarbon, S.Todorovic, S.Stevenson, D.W.[Planteome: A resource for common reference ontologies and applications for plant biology]Planteome: A resource for common reference ontologies and applications for plant biology

The Crop Ontology is a service of the Integrated Breeding Platform (www.integratedbreeding.net) in collaboration with the CGIAR and partners and under the leadership of Bioversity international. The Crop Ontology (www.cropontology.org) provides harmonized and validated breeders’ trait names, mea...


Arnaud, ElizabethValette, L.Pietragalla, J.Laporte, M-A.Aubert, C.Devare, MedhaMcLaren, G.Ribaut, J-M.[The Crop Ontology: a source of standard traits and variables for breeding and agronomy]The Crop Ontology: a source of standard traits and variables for breeding and agronomy

Crop ontologies have been identified under the Generation Challenge Program and at the International Potato Center (CIP) as a crucial tool for managing and analyzing crop related information. Here we report progress on applying ontological concepts on sweetpotato traits important for breeders and...


Simon, R.Hualla, V.Eyzaguirre, R.Córdova, R.Mwanga, R.O.M.Rossel, G.Gruneberg, W.J.[Progress in developing a sweetpotato ontology for breeders]Progress in developing a sweetpotato ontology for breeders

The potato ontology is part of a community effort to establish a set of related crop ontologies. The advantage of an ontology is that both humans and software applications can understand a data domain. This will allow the application of numerical or data mining techniques that may help to uncover...


Simon, R.Hualla, V.Salas, E.Gómez, R.Córdova, R.Haan, Stef deBonierbale, Merideth W.[Progress in developing a potato ontology for breeders.]Progress in developing a potato ontology for breeders.

In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop wheat data interoperability guidelines. Interoperability is the ability of two or more systems and devices to cooperate and exchange data, and interpret that shared informa...


Dzale-Yeumo, E.Alaux, M.Arnaud, ElizabethAubin, S.Baumann, U.Buche, P.Cooper, L.Cwiek-Kupczynska, H.Davey, R.P.Fulss, R.A.Jonquet, C.Laporte, M-A.Larmande, PierrePommier, C.Protonotarios, V.Reverte, C.Shrestha, R.Subirats, I.Venkatesan, A.Whan, A.Quesneville, H.[Developing data interoperability using standards: A wheat community use case]Developing data interoperability using standards: A wheat community use case
Arnaud, ElizabethShrestha, R.Kulakow, P.A.Bakare, M.López Montes, A.Ofodile, S.Reddy T.P.Prasad, P.Shah, TushaarHash, C.T.Weltzien, EvaSissoko, I.Guerrero, A.F.Simon, R.Borja Borja, N.F.Ramil, M.Matteis, L.Skofic, M.Hazekamp, T.McLaren, G.Cooper, L.Jaiswal, P.Menda, N.Nelson, R.Grant, D.Bastow, R.Mueller, L.Rami, J.F.[The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.]The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes.

World Bank Group[ Technical Assessment of Open Data Platforms for National Statistical Organisations ]

Takeuchi, HirotakaShibata, Tsutomu[ Japan, Moving Toward a More Advanced Knowledge Economy : Volume 2. Advanced Knowledge-Creating Companies ]

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